myRT

myRT report for GCA_900639545.1_E7933_hybrid_assembly

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Seq: LR135384.1 Enterococcus faecium isolate E7933 genome assembly, chromosome: 1 (2926852 bp)
Overview 1 RT 1: 355296-360102 bp 2 RT 2: 1010398-1019873 bp 3 RT 3: 1150641-1156490 bp 4 RT 4: 1875863-1882329 bp 5 RT 5: 2801227-2806267 bp Neighborhood of RT #1 [355296, 360110] dha_L_ycgS G6PD_bact RVT-GII GIIM Crp TnrB3 Neighborhood of RT #2 [1010398, 1019881] P-type_ATPase_Ca_prok P-type_ATPase_SERCA UbiE RVT-GII GIIM HMG-CoA-S_prok thiolase HMG-CoA_reductase_classII Neighborhood of RT #3 [1150641, 1156513] PRK06019 Adenylsuccinate_lyase_1 RVT-GII GIIM PRK09362 Neighborhood of RT #4 [1875863, 1882355] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Dcm Neighborhood of RT #5 [2801227, 2806281] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 355296-355901 bp Feature: domain Description: dha_L_ycgS Location: 355320-355878 bp Feature: domain Description: dha_L_ycgS Location: 355320-355878 bp Feature: gene Location: 356048-356713 bp Feature: domain Description: G6PD_bact Location: 356057-356693 bp Feature: domain Description: G6PD_bact Location: 356057-356693 bp Feature: gene Location: 357218-358606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357539-358154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357539-3581 54 bp Feature: domain Description: GIIM Note: maturase Location: 358211-358427 bp Feature: domain Description: GIIM Note: maturase Location: 35821 1 -358427 bp Feature: gene Location: 358895-359554 bp Feature: domain Description: Crp Location: 358946-359528 bp Feature: domain Description: Crp Location: 358946-359528 bp Feature: gene Location: 359631-360110 bp Feature: domain Description: TnrB3 Location: 359637-360102 bp Feature: domain Description: TnrB3 Location: 359637-3601 02 bp Feature: gene Location: 1010398-1013064 bp Feature: domain Description: P-type_ATPase_Ca_prok Location: 1010485-1012642 bp Feature: domain Description: P-type_ATPase_Ca_prok Location: 1 01 0485-1 01 2642 bp Feature: domain Description: P-type_ATPase_SERCA Location: 1012765-1013038 bp Feature: domain Description: P-type_ATPase_SERCA Location: 1 01 2765-1 01 3038 bp Feature: gene Location: 1013428-1014180 bp Feature: domain Description: UbiE Location: 1013530-1013755 bp Feature: domain Description: UbiE Location: 1 01 3530-1 01 3755 bp Feature: gene Location: 1014633-1016021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1014954-1015569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 01 4954-1 01 5569 bp Feature: domain Description: GIIM Note: maturase Location: 1015626-1015842 bp Feature: domain Description: GIIM Note: maturase Location: 1 01 5626-1 01 5842 bp Feature: gene Location: 1016101-1017255 bp Feature: domain Description: HMG-CoA-S_prok Location: 1016110-1017247 bp Feature: domain Description: HMG-CoA-S_prok Location: 1 01 61 1 0-1 01 7247 bp Feature: gene Location: 1017431-1019881 bp Feature: domain Description: thiolase Location: 1017455-1018595 bp Feature: domain Description: thiolase Location: 1 01 7455-1 01 8595 bp Feature: domain Description: HMG-CoA_reductase_classII Location: 1018634-1019873 bp Feature: domain Description: HMG-CoA_reductase_classII Location: 1 01 8634-1 01 9873 bp Feature: gene Location: 1150641-1151765 bp Feature: domain Description: PRK06019 Location: 1150665-1151754 bp Feature: domain Description: PRK0601 9 Location: 1 1 50665-1 1 51 754 bp Feature: gene Location: 1151778-1153073 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1151790-1153059 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1 1 51 790-1 1 53059 bp Feature: gene Location: 1153195-1154583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1153516-1154131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 5351 6-1 1 541 31 bp Feature: domain Description: GIIM Note: maturase Location: 1154188-1154404 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 541 88-1 1 54404 bp Feature: gene Location: 1155152-1155529 bp Feature: gene Location: 1155785-1156513 bp Feature: domain Description: PRK09362 Location: 1155788-1156490 bp Feature: domain Description: PRK09362 Location: 1 1 55788-1 1 56490 bp Feature: gene Location: 1875863-1876363 bp Feature: domain Description: ArdA Location: 1875881-1876352 bp Feature: domain Description: ArdA Location: 1 875881 -1 876352 bp Feature: gene Location: 1876376-1876528 bp Feature: gene Location: 1876704-1878614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1877037-1877775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 877037-1 877775 bp Feature: domain Description: HNHc Note: nucleases Location: 1878330-1878495 bp Feature: domain Description: HNHc Note: nucleases Location: 1 878330-1 878495 bp Feature: gene Location: 1879494-1880678 bp Feature: domain Description: HTH_XRE Location: 1879524-1879668 bp Feature: domain Description: HTH_XRE Location: 1 879524-1 879668 bp Feature: domain Description: Rol_Rep_N Location: 1879701-1879965 bp Feature: domain Description: Rol_Rep_N Location: 1 879701 -1 879965 bp Feature: domain Description: Rep_trans Location: 1879989-1880601 bp Feature: domain Description: Rep_trans Location: 1 879989-1 880601 bp Feature: gene Location: 1881213-1882355 bp Feature: domain Description: Dcm Location: 1881216-1882329 bp Feature: domain Description: Dcm Location: 1 881 21 6-1 882329 bp Feature: gene Location: 2801227-2801370 bp Feature: gene Location: 2801463-2802647 bp Feature: domain Description: HTH_XRE Location: 2801493-2801637 bp Feature: domain Description: HTH_XRE Location: 2801 493-2801 637 bp Feature: domain Description: Rol_Rep_N Location: 2801670-2801934 bp Feature: domain Description: Rol_Rep_N Location: 2801 670-2801 934 bp Feature: domain Description: Rep_trans Location: 2801958-2802570 bp Feature: domain Description: Rep_trans Location: 2801 958-2802570 bp Feature: gene Location: 2803527-2805437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2803860-2804598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2803860-2804598 bp Feature: domain Description: HNHc Note: nucleases Location: 2805153-2805318 bp Feature: domain Description: HNHc Note: nucleases Location: 28051 53-280531 8 bp Feature: gene Location: 2805625-2805765 bp Feature: gene Location: 2805778-2806281 bp Feature: domain Description: ArdA Location: 2805796-2806267 bp Feature: domain Description: ArdA Location: 2805796-2806267 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dha_L_ycgS (TIGR02365), G6PD_bact (pfam10786), RVT-GII, GIIM (pfam08388), Crp (pfam00325), TnrB3 (COG3559), P-type_ATPase_Ca_prok (cd02089), P-type_ATPase_SERCA (cd02083), UbiE (COG2226), HMG-CoA-S_prok (TIGR01835)
thiolase (PRK06158), HMG-CoA_reductase_classII (cd00644), PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed), Adenylsuccinate_lyase_1 (cd01360), PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed), ArdA (pfam07275), HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)
Dcm (COG0270)

Seq: LR135385.1 Enterococcus faecium isolate E7933 genome assembly, plasmid: 2 (238264 bp)
Overview 1 RT 1: 23247-29094 bp Neighborhood of RT #1 [23247, 29213] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 23247-24941 bp Feature: domain Description: VirB4 Location: 23565-24249 bp Feature: domain Description: VirB4 Location: 2 3565-2 42 49 bp Feature: gene Location: 25209-25442 bp Feature: gene Location: 25629-27506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25944-26682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5944-2 6682 bp Feature: domain Description: HNHc Note: nucleases Location: 27240-27393 bp Feature: domain Description: HNHc Note: nucleases Location: 2 72 40-2 7393 bp Feature: gene Location: 27694-28014 bp Feature: gene Location: 28014-29213 bp Feature: domain Description: Glucosaminidase Location: 28284-28680 bp Feature: domain Description: Glucosaminidase Location: 2 82 84-2 8680 bp Feature: domain Description: Peptidase_M23 Location: 28857-29094 bp Feature: domain Description: Peptidase_M2 3 Location: 2 8857-2 9094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: LR135386.1 Enterococcus faecium isolate E7933 genome assembly, plasmid: 3 (70572 bp)
Overview 1 RT 1: 28450-34297 bp Neighborhood of RT #1 [28450, 34416] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 28450-30144 bp Feature: domain Description: VirB4 Location: 28768-29452 bp Feature: domain Description: VirB4 Location: 28768-29452 bp Feature: gene Location: 30412-30645 bp Feature: gene Location: 30832-32709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31147-31885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1147-3 1885 bp Feature: domain Description: HNHc Note: nucleases Location: 32443-32596 bp Feature: domain Description: HNHc Note: nucleases Location: 3 2443 -3 2596 bp Feature: gene Location: 32897-33217 bp Feature: gene Location: 33217-34416 bp Feature: domain Description: Glucosaminidase Location: 33487-33883 bp Feature: domain Description: Glucosaminidase Location: 3 3 487-3 3 883 bp Feature: domain Description: Peptidase_M23 Location: 34060-34297 bp Feature: domain Description: Peptidase_M23 Location: 3 4060-3 4297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)