myRT

myRT report for GCA_900639575.1_E8014_hybrid_assembly

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Seq: LR135351.1 Enterococcus faecium isolate E8014 genome assembly, chromosome: 1 (2864834 bp)
Overview 1 RT 1: 1098587-1103050 bp 2 RT 2: 2734003-2746748 bp Neighborhood of RT #1 [1098587, 1103050] TcpE AAA_10 RVT-GII RVT-GII Neighborhood of RT #2 [2734003, 2746748] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA TcpE AAA_10 RVT-GII AAA_10 Feature: gene Location: 1098587-1098976 bp Feature: domain Description: TcpE Location: 1098605-1098905 bp Feature: domain Description: TcpE Location: 1 098605-1 098905 bp Feature: gene Location: 1098963-1100513 bp Feature: domain Description: AAA_10 Location: 1100292-1100475 bp Feature: domain Description: AAA_1 0 Location: 1 1 00292-1 1 00475 bp Feature: gene Location: 1101212-1101754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1101515-1101749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 01 51 5-1 1 01 749 bp Feature: gene Location: 1102073-1102273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1102079-1102217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 02079-1 1 0221 7 bp Feature: gene Location: 1102386-1102583 bp Feature: gene Location: 1102625-1103050 bp Feature: gene Location: 2734003-2734146 bp Feature: gene Location: 2734239-2735423 bp Feature: domain Description: HTH_XRE Location: 2734269-2734413 bp Feature: domain Description: HTH_XRE Location: 2734269-273441 3 bp Feature: domain Description: Rol_Rep_N Location: 2734446-2734710 bp Feature: domain Description: Rol_Rep_N Location: 2734446-273471 0 bp Feature: domain Description: Rep_trans Location: 2734734-2735346 bp Feature: domain Description: Rep_trans Location: 2734734-2735346 bp Feature: gene Location: 2736303-2738213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2736636-2737374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2736636-2737374 bp Feature: domain Description: HNHc Note: nucleases Location: 2737929-2738094 bp Feature: domain Description: HNHc Note: nucleases Location: 2737929-2738094 bp Feature: gene Location: 2738401-2738541 bp Feature: gene Location: 2738554-2739057 bp Feature: domain Description: ArdA Location: 2738572-2739043 bp Feature: domain Description: ArdA Location: 2738572-2739043 bp Feature: gene Location: 2739117-2739506 bp Feature: domain Description: TcpE Location: 2739135-2739435 bp Feature: domain Description: TcpE Location: 27391 35-2739435 bp Feature: gene Location: 2739493-2741043 bp Feature: domain Description: AAA_10 Location: 2740822-2741005 bp Feature: domain Description: AAA_1 0 Location: 2740822-2741 005 bp Feature: gene Location: 2741740-2743566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2742040-2742739 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2742040-2742739 bp Feature: gene Location: 2743700-2744620 bp Feature: domain Description: AAA_10 Location: 2743706-2744585 bp Feature: domain Description: AAA_1 0 Location: 2743706-2744585 bp Feature: gene Location: 2744625-2746748 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TcpE (pfam12648), AAA_10 (pfam12846), RVT-GII, HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), HNHc (smart00507), ArdA (pfam07275)

Seq: LR135352.1 Enterococcus faecium isolate E8014 genome assembly, plasmid: 2 (238961 bp)
Overview 1 RT 1: 24359-30212 bp Neighborhood of RT #1 [24359, 30331] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 24359-26053 bp Feature: domain Description: VirB4 Location: 24677-25361 bp Feature: domain Description: VirB4 Location: 2 4677-2 5361 bp Feature: gene Location: 26321-26554 bp Feature: gene Location: 26741-28618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27056-27794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7056-2 7794 bp Feature: domain Description: HNHc Note: nucleases Location: 28352-28505 bp Feature: domain Description: HNHc Note: nucleases Location: 2 8352 -2 8505 bp Feature: gene Location: 28806-29126 bp Feature: gene Location: 29126-30331 bp Feature: domain Description: Glucosaminidase Location: 29402-29798 bp Feature: domain Description: Glucosaminidase Location: 2 9402 -2 9798 bp Feature: domain Description: Peptidase_M23 Location: 29975-30212 bp Feature: domain Description: Peptidase_M2 3 Location: 2 9975-302 12 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)