myRT

myRT report for GCA_900639585.1_E7948_hybrid_assembly

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Seq: LR135357.1 Enterococcus faecium isolate E7948 genome assembly, chromosome: 1 (2648040 bp)
Overview 1 RT 1: 2257942-2262694 bp Neighborhood of RT #1 [2257942, 2262783] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 2257942-2258439 bp Feature: domain Description: ArdA Location: 2257960-2258425 bp Feature: domain Description: ArdA Location: 2257960-2258425 bp Feature: gene Location: 2258556-2258723 bp Feature: gene Location: 2258884-2260794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2259217-2259955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 225921 7-2259955 bp Feature: domain Description: HNHc Note: nucleases Location: 2260510-2260675 bp Feature: domain Description: HNHc Note: nucleases Location: 226051 0-2260675 bp Feature: gene Location: 2261303-2261452 bp Feature: gene Location: 2261578-2262783 bp Feature: domain Description: HTH_XRE Location: 2261623-2261767 bp Feature: domain Description: HTH_XRE Location: 2261 623-2261 767 bp Feature: domain Description: Rol_Rep_N Location: 2261794-2262061 bp Feature: domain Description: Rol_Rep_N Location: 2261 794-2262061 bp Feature: domain Description: Rep_trans Location: 2262085-2262694 bp Feature: domain Description: Rep_trans Location: 2262085-2262694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: LR135358.1 Enterococcus faecium isolate E7948 genome assembly, plasmid: 2 (293851 bp)
Overview 1 RT 1: 24359-30212 bp 2 RT 2: 59218-65047 bp Neighborhood of RT #1 [24359, 30331] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Neighborhood of RT #2 [59218, 65058] Transposase_mut TraG-D_C RVT-GII HNHc DacC Feature: gene Location: 24359-26053 bp Feature: domain Description: VirB4 Location: 24677-25361 bp Feature: domain Description: VirB4 Location: 2 4677-2 5361 bp Feature: gene Location: 26321-26554 bp Feature: gene Location: 26741-28618 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27056-27794 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 7056-2 7794 bp Feature: domain Description: HNHc Note: nucleases Location: 28352-28505 bp Feature: domain Description: HNHc Note: nucleases Location: 2 8352 -2 8505 bp Feature: gene Location: 28806-29126 bp Feature: gene Location: 29126-30331 bp Feature: domain Description: Glucosaminidase Location: 29402-29798 bp Feature: domain Description: Glucosaminidase Location: 2 9402 -2 9798 bp Feature: domain Description: Peptidase_M23 Location: 29975-30212 bp Feature: domain Description: Peptidase_M2 3 Location: 2 9975-302 12 bp Feature: gene Location: 59218-60396 bp Feature: domain Description: Transposase_mut Location: 59239-60331 bp Feature: domain Description: Transposase_mut Location: 592 39-60331 bp Feature: gene Location: 60444-61121 bp Feature: domain Description: TraG-D_C Location: 60621-60975 bp Feature: domain Description: TraG-D_C Location: 6062 1-60975 bp Feature: gene Location: 61252-63156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61567-62299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61567-62 2 99 bp Feature: domain Description: HNHc Note: nucleases Location: 62878-63046 bp Feature: domain Description: HNHc Note: nucleases Location: 62 878-63046 bp Feature: gene Location: 63562-64104 bp Feature: gene Location: 64129-65058 bp Feature: domain Description: DacC Location: 64357-65047 bp Feature: domain Description: DacC Location: 64357-65047 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551), Transposase_mut (pfam00872), TraG-D_C (pfam12696), DacC (COG1686)

Seq: LR135359.1 Enterococcus faecium isolate E7948 genome assembly, plasmid: 3 (51724 bp)
Overview 1 RT 1: 11303-16667 bp Neighborhood of RT #1 [11303, 16672] DUF3801 VirD4 RVT-GII HNHc TraG-D_C Maff2 Feature: gene Location: 11303-11785 bp Feature: domain Description: DUF3801 Location: 11366-11756 bp Feature: domain Description: DUF3 801 Location: 113 66-11756 bp Feature: gene Location: 11782-12927 bp Feature: domain Description: VirD4 Location: 11962-12817 bp Feature: domain Description: VirD4 Location: 11962-12817 bp Feature: gene Location: 13584-15488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13899-14631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 899-1463 1 bp Feature: domain Description: HNHc Note: nucleases Location: 15210-15378 bp Feature: domain Description: HNHc Note: nucleases Location: 15210-153 78 bp Feature: gene Location: 15619-16380 bp Feature: domain Description: TraG-D_C Location: 15796-16147 bp Feature: domain Description: TraG-D_C Location: 15796-16147 bp Feature: gene Location: 16424-16672 bp Feature: domain Description: Maff2 Location: 16460-16667 bp Feature: domain Description: Maff2 Location: 16460-16667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, HNHc (smart00507), TraG-D_C (pfam12696), Maff2 (pfam12750)