myRT

myRT report for GCA_900639605.1_E8290_hybrid_assembly

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Seq: LR135394.1 Enterococcus faecium isolate E8290 genome assembly, chromosome: 1 (2894948 bp)
Overview 1 RT 1: 357186-361992 bp 2 RT 2: 1153379-1159228 bp 3 RT 3: 1255115-1261788 bp 4 RT 4: 1341032-1345424 bp 5 RT 5: 1882029-1888495 bp 6 RT 6: 2769564-2774604 bp Neighborhood of RT #1 [357186, 362000] dha_L_ycgS G6PD_bact RVT-GII GIIM Crp TnrB3 Neighborhood of RT #2 [1153379, 1159251] PRK06019 Adenylsuccinate_lyase_1 RVT-GII GIIM PRK09362 Neighborhood of RT #3 [1255115, 1261790] Tra8 FrsA RVT-GII GIIM GAPDH-I obgE Neighborhood of RT #4 [1341032, 1345424] doc_partner Doc RVT-GII GIIM ldh Neighborhood of RT #5 [1882029, 1888521] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Dcm Neighborhood of RT #6 [2769564, 2774618] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 357186-357791 bp Feature: domain Description: dha_L_ycgS Location: 357210-357768 bp Feature: domain Description: dha_L_ycgS Location: 35721 0-357768 bp Feature: gene Location: 357938-358603 bp Feature: domain Description: G6PD_bact Location: 357947-358583 bp Feature: domain Description: G6PD_bact Location: 357947-358583 bp Feature: gene Location: 359108-360496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 359429-360044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 359429-360044 bp Feature: domain Description: GIIM Note: maturase Location: 360101-360317 bp Feature: domain Description: GIIM Note: maturase Location: 3601 01 -36031 7 bp Feature: gene Location: 360785-361444 bp Feature: domain Description: Crp Location: 360836-361418 bp Feature: domain Description: Crp Location: 360836-361 41 8 bp Feature: gene Location: 361521-362000 bp Feature: domain Description: TnrB3 Location: 361527-361992 bp Feature: domain Description: TnrB3 Location: 361 527-361 992 bp Feature: gene Location: 1153379-1154503 bp Feature: domain Description: PRK06019 Location: 1153403-1154492 bp Feature: domain Description: PRK0601 9 Location: 1 1 53403-1 1 54492 bp Feature: gene Location: 1154516-1155811 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1154528-1155797 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1 1 54528-1 1 55797 bp Feature: gene Location: 1155933-1157321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1156254-1156869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 56254-1 1 56869 bp Feature: domain Description: GIIM Note: maturase Location: 1156926-1157142 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 56926-1 1 571 42 bp Feature: gene Location: 1157890-1158267 bp Feature: gene Location: 1158523-1159251 bp Feature: domain Description: PRK09362 Location: 1158526-1159228 bp Feature: domain Description: PRK09362 Location: 1 1 58526-1 1 59228 bp Feature: gene Location: 1255115-1256074 bp Feature: domain Description: Tra8 Location: 1255118-1256051 bp Feature: domain Description: Tra8 Location: 1 2551 1 8-1 256051 bp Feature: gene Location: 1256260-1257195 bp Feature: domain Description: FrsA Location: 1256464-1257187 bp Feature: domain Description: FrsA Location: 1 256464-1 2571 87 bp Feature: gene Location: 1257703-1259091 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1258024-1258639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 258024-1 258639 bp Feature: domain Description: GIIM Note: maturase Location: 1258696-1258912 bp Feature: domain Description: GIIM Note: maturase Location: 1 258696-1 25891 2 bp Feature: gene Location: 1259179-1260231 bp Feature: domain Description: GAPDH-I Location: 1259233-1260205 bp Feature: domain Description: GAPDH-I Location: 1 259233-1 260205 bp Feature: gene Location: 1260477-1261790 bp Feature: domain Description: obgE Location: 1260486-1261788 bp Feature: domain Description: obgE Location: 1 260486-1 261 788 bp Feature: gene Location: 1341032-1341268 bp Feature: domain Description: doc_partner Location: 1341053-1341263 bp Feature: domain Description: doc_partner Location: 1 341 053-1 341 263 bp Feature: gene Location: 1341265-1341663 bp Feature: domain Description: Doc Location: 1341274-1341634 bp Feature: domain Description: Doc Location: 1 341 274-1 341 634 bp Feature: gene Location: 1342742-1344130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1343063-1343678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 343063-1 343678 bp Feature: domain Description: GIIM Note: maturase Location: 1343735-1343951 bp Feature: domain Description: GIIM Note: maturase Location: 1 343735-1 343951 bp Feature: gene Location: 1344229-1345173 bp Feature: domain Description: ldh Location: 1344232-1345168 bp Feature: domain Description: ldh Location: 1 344232-1 3451 68 bp Feature: gene Location: 1345251-1345424 bp Feature: gene Location: 1882029-1882529 bp Feature: domain Description: ArdA Location: 1882047-1882518 bp Feature: domain Description: ArdA Location: 1 882047-1 88251 8 bp Feature: gene Location: 1882542-1882694 bp Feature: gene Location: 1882870-1884780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1883203-1883941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 883203-1 883941 bp Feature: domain Description: HNHc Note: nucleases Location: 1884496-1884661 bp Feature: domain Description: HNHc Note: nucleases Location: 1 884496-1 884661 bp Feature: gene Location: 1885660-1886844 bp Feature: domain Description: HTH_XRE Location: 1885690-1885834 bp Feature: domain Description: HTH_XRE Location: 1 885690-1 885834 bp Feature: domain Description: Rol_Rep_N Location: 1885867-1886131 bp Feature: domain Description: Rol_Rep_N Location: 1 885867-1 8861 31 bp Feature: domain Description: Rep_trans Location: 1886155-1886767 bp Feature: domain Description: Rep_trans Location: 1 8861 55-1 886767 bp Feature: gene Location: 1887379-1888521 bp Feature: domain Description: Dcm Location: 1887382-1888495 bp Feature: domain Description: Dcm Location: 1 887382-1 888495 bp Feature: gene Location: 2769564-2769707 bp Feature: gene Location: 2769800-2770984 bp Feature: domain Description: HTH_XRE Location: 2769830-2769974 bp Feature: domain Description: HTH_XRE Location: 2769830-2769974 bp Feature: domain Description: Rol_Rep_N Location: 2770007-2770271 bp Feature: domain Description: Rol_Rep_N Location: 2770007-2770271 bp Feature: domain Description: Rep_trans Location: 2770295-2770907 bp Feature: domain Description: Rep_trans Location: 2770295-2770907 bp Feature: gene Location: 2771864-2773774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2772197-2772935 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27721 97-2772935 bp Feature: domain Description: HNHc Note: nucleases Location: 2773490-2773655 bp Feature: domain Description: HNHc Note: nucleases Location: 2773490-2773655 bp Feature: gene Location: 2773962-2774102 bp Feature: gene Location: 2774115-2774618 bp Feature: domain Description: ArdA Location: 2774133-2774604 bp Feature: domain Description: ArdA Location: 27741 33-2774604 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dha_L_ycgS (TIGR02365), G6PD_bact (pfam10786), RVT-GII, GIIM (pfam08388), Crp (pfam00325), TnrB3 (COG3559), PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed), Adenylsuccinate_lyase_1 (cd01360), PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed), Tra8 (COG2826)
FrsA (COG1073), GAPDH-I (TIGR01534), obgE (PRK12299), doc_partner (TIGR02609), Doc (COG3654), ldh (PRK00066), ArdA (pfam07275), HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106)
Rep_trans (pfam02486), Dcm (COG0270)