myRT

myRT report for GCA_900639615.1_E8328_hybrid_assembly

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Seq: LR135414.1 Enterococcus faecium isolate E8328 genome assembly, chromosome: 1 (2926309 bp)
Overview 1 RT 1: 355296-360102 bp 2 RT 2: 1151489-1157338 bp 3 RT 3: 1253225-1259898 bp 4 RT 4: 1339142-1343534 bp 5 RT 5: 1881648-1888114 bp 6 RT 6: 2800804-2805844 bp Neighborhood of RT #1 [355296, 360110] dha_L_ycgS G6PD_bact RVT-GII GIIM Crp TnrB3 Neighborhood of RT #2 [1151489, 1157361] PRK06019 Adenylsuccinate_lyase_1 RVT-GII GIIM PRK09362 Neighborhood of RT #3 [1253225, 1259900] Tra8 FrsA RVT-GII GIIM GAPDH-I obgE Neighborhood of RT #4 [1339142, 1343534] doc_partner Doc RVT-GII GIIM ldh Neighborhood of RT #5 [1881648, 1888140] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Dcm Neighborhood of RT #6 [2800804, 2805858] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 355296-355901 bp Feature: domain Description: dha_L_ycgS Location: 355320-355878 bp Feature: domain Description: dha_L_ycgS Location: 355320-355878 bp Feature: gene Location: 356048-356713 bp Feature: domain Description: G6PD_bact Location: 356057-356693 bp Feature: domain Description: G6PD_bact Location: 356057-356693 bp Feature: gene Location: 357218-358606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357539-358154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357539-3581 54 bp Feature: domain Description: GIIM Note: maturase Location: 358211-358427 bp Feature: domain Description: GIIM Note: maturase Location: 35821 1 -358427 bp Feature: gene Location: 358895-359554 bp Feature: domain Description: Crp Location: 358946-359528 bp Feature: domain Description: Crp Location: 358946-359528 bp Feature: gene Location: 359631-360110 bp Feature: domain Description: TnrB3 Location: 359637-360102 bp Feature: domain Description: TnrB3 Location: 359637-3601 02 bp Feature: gene Location: 1151489-1152613 bp Feature: domain Description: PRK06019 Location: 1151513-1152602 bp Feature: domain Description: PRK0601 9 Location: 1 1 51 51 3-1 1 52602 bp Feature: gene Location: 1152626-1153921 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1152638-1153907 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1 1 52638-1 1 53907 bp Feature: gene Location: 1154043-1155431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1154364-1154979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 54364-1 1 54979 bp Feature: domain Description: GIIM Note: maturase Location: 1155036-1155252 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 55036-1 1 55252 bp Feature: gene Location: 1156000-1156377 bp Feature: gene Location: 1156633-1157361 bp Feature: domain Description: PRK09362 Location: 1156636-1157338 bp Feature: domain Description: PRK09362 Location: 1 1 56636-1 1 57338 bp Feature: gene Location: 1253225-1254184 bp Feature: domain Description: Tra8 Location: 1253228-1254161 bp Feature: domain Description: Tra8 Location: 1 253228-1 2541 61 bp Feature: gene Location: 1254370-1255305 bp Feature: domain Description: FrsA Location: 1254574-1255297 bp Feature: domain Description: FrsA Location: 1 254574-1 255297 bp Feature: gene Location: 1255813-1257201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1256134-1256749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2561 34-1 256749 bp Feature: domain Description: GIIM Note: maturase Location: 1256806-1257022 bp Feature: domain Description: GIIM Note: maturase Location: 1 256806-1 257022 bp Feature: gene Location: 1257289-1258341 bp Feature: domain Description: GAPDH-I Location: 1257343-1258315 bp Feature: domain Description: GAPDH-I Location: 1 257343-1 25831 5 bp Feature: gene Location: 1258587-1259900 bp Feature: domain Description: obgE Location: 1258596-1259898 bp Feature: domain Description: obgE Location: 1 258596-1 259898 bp Feature: gene Location: 1339142-1339378 bp Feature: domain Description: doc_partner Location: 1339163-1339373 bp Feature: domain Description: doc_partner Location: 1 3391 63-1 339373 bp Feature: gene Location: 1339375-1339773 bp Feature: domain Description: Doc Location: 1339384-1339744 bp Feature: domain Description: Doc Location: 1 339384-1 339744 bp Feature: gene Location: 1340852-1342240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1341173-1341788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 341 1 73-1 341 788 bp Feature: domain Description: GIIM Note: maturase Location: 1341845-1342061 bp Feature: domain Description: GIIM Note: maturase Location: 1 341 845-1 342061 bp Feature: gene Location: 1342339-1343283 bp Feature: domain Description: ldh Location: 1342342-1343278 bp Feature: domain Description: ldh Location: 1 342342-1 343278 bp Feature: gene Location: 1343361-1343534 bp Feature: gene Location: 1881648-1882148 bp Feature: domain Description: ArdA Location: 1881666-1882137 bp Feature: domain Description: ArdA Location: 1 881 666-1 8821 37 bp Feature: gene Location: 1882161-1882313 bp Feature: gene Location: 1882489-1884399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1882822-1883560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 882822-1 883560 bp Feature: domain Description: HNHc Note: nucleases Location: 1884115-1884280 bp Feature: domain Description: HNHc Note: nucleases Location: 1 8841 1 5-1 884280 bp Feature: gene Location: 1885279-1886463 bp Feature: domain Description: HTH_XRE Location: 1885309-1885453 bp Feature: domain Description: HTH_XRE Location: 1 885309-1 885453 bp Feature: domain Description: Rol_Rep_N Location: 1885486-1885750 bp Feature: domain Description: Rol_Rep_N Location: 1 885486-1 885750 bp Feature: domain Description: Rep_trans Location: 1885774-1886386 bp Feature: domain Description: Rep_trans Location: 1 885774-1 886386 bp Feature: gene Location: 1886998-1888140 bp Feature: domain Description: Dcm Location: 1887001-1888114 bp Feature: domain Description: Dcm Location: 1 887001 -1 8881 1 4 bp Feature: gene Location: 2800804-2800947 bp Feature: gene Location: 2801040-2802224 bp Feature: domain Description: HTH_XRE Location: 2801070-2801214 bp Feature: domain Description: HTH_XRE Location: 2801 070-2801 21 4 bp Feature: domain Description: Rol_Rep_N Location: 2801247-2801511 bp Feature: domain Description: Rol_Rep_N Location: 2801 247-2801 51 1 bp Feature: domain Description: Rep_trans Location: 2801535-2802147 bp Feature: domain Description: Rep_trans Location: 2801 535-28021 47 bp Feature: gene Location: 2803104-2805014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2803437-2804175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2803437-28041 75 bp Feature: domain Description: HNHc Note: nucleases Location: 2804730-2804895 bp Feature: domain Description: HNHc Note: nucleases Location: 2804730-2804895 bp Feature: gene Location: 2805202-2805342 bp Feature: gene Location: 2805355-2805858 bp Feature: domain Description: ArdA Location: 2805373-2805844 bp Feature: domain Description: ArdA Location: 2805373-2805844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dha_L_ycgS (TIGR02365), G6PD_bact (pfam10786), RVT-GII, GIIM (pfam08388), Crp (pfam00325), TnrB3 (COG3559), PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed), Adenylsuccinate_lyase_1 (cd01360), PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed), Tra8 (COG2826)
FrsA (COG1073), GAPDH-I (TIGR01534), obgE (PRK12299), doc_partner (TIGR02609), Doc (COG3654), ldh (PRK00066), ArdA (pfam07275), HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106)
Rep_trans (pfam02486), Dcm (COG0270)