myRT

myRT report for GCA_900639625.1_E8284_hybrid_assembly

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Seq: LR135408.1 Enterococcus faecium isolate E8284 genome assembly, chromosome: 1 (2923480 bp)
Overview 1 RT 1: 355296-360102 bp 2 RT 2: 1151489-1157338 bp 3 RT 3: 1253225-1259898 bp 4 RT 4: 1336701-1341093 bp 5 RT 5: 1879207-1885673 bp 6 RT 6: 2798096-2803136 bp Neighborhood of RT #1 [355296, 360110] dha_L_ycgS G6PD_bact RVT-GII GIIM Crp TnrB3 Neighborhood of RT #2 [1151489, 1157361] PRK06019 Adenylsuccinate_lyase_1 RVT-GII GIIM PRK09362 Neighborhood of RT #3 [1253225, 1259900] Tra8 FrsA RVT-GII GIIM GAPDH-I obgE Neighborhood of RT #4 [1336701, 1341093] doc_partner Doc RVT-GII GIIM ldh Neighborhood of RT #5 [1879207, 1885699] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Dcm Neighborhood of RT #6 [2798096, 2803150] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 355296-355901 bp Feature: domain Description: dha_L_ycgS Location: 355320-355878 bp Feature: domain Description: dha_L_ycgS Location: 355320-355878 bp Feature: gene Location: 356048-356713 bp Feature: domain Description: G6PD_bact Location: 356057-356693 bp Feature: domain Description: G6PD_bact Location: 356057-356693 bp Feature: gene Location: 357218-358606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357539-358154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357539-3581 54 bp Feature: domain Description: GIIM Note: maturase Location: 358211-358427 bp Feature: domain Description: GIIM Note: maturase Location: 35821 1 -358427 bp Feature: gene Location: 358895-359554 bp Feature: domain Description: Crp Location: 358946-359528 bp Feature: domain Description: Crp Location: 358946-359528 bp Feature: gene Location: 359631-360110 bp Feature: domain Description: TnrB3 Location: 359637-360102 bp Feature: domain Description: TnrB3 Location: 359637-3601 02 bp Feature: gene Location: 1151489-1152613 bp Feature: domain Description: PRK06019 Location: 1151513-1152602 bp Feature: domain Description: PRK0601 9 Location: 1 1 51 51 3-1 1 52602 bp Feature: gene Location: 1152626-1153921 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1152638-1153907 bp Feature: domain Description: Adenylsuccinate_lyase_1 Location: 1 1 52638-1 1 53907 bp Feature: gene Location: 1154043-1155431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1154364-1154979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 54364-1 1 54979 bp Feature: domain Description: GIIM Note: maturase Location: 1155036-1155252 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 55036-1 1 55252 bp Feature: gene Location: 1156000-1156377 bp Feature: gene Location: 1156633-1157361 bp Feature: domain Description: PRK09362 Location: 1156636-1157338 bp Feature: domain Description: PRK09362 Location: 1 1 56636-1 1 57338 bp Feature: gene Location: 1253225-1254184 bp Feature: domain Description: Tra8 Location: 1253228-1254161 bp Feature: domain Description: Tra8 Location: 1 253228-1 2541 61 bp Feature: gene Location: 1254370-1255305 bp Feature: domain Description: FrsA Location: 1254574-1255297 bp Feature: domain Description: FrsA Location: 1 254574-1 255297 bp Feature: gene Location: 1255813-1257201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1256134-1256749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 2561 34-1 256749 bp Feature: domain Description: GIIM Note: maturase Location: 1256806-1257022 bp Feature: domain Description: GIIM Note: maturase Location: 1 256806-1 257022 bp Feature: gene Location: 1257289-1258341 bp Feature: domain Description: GAPDH-I Location: 1257343-1258315 bp Feature: domain Description: GAPDH-I Location: 1 257343-1 25831 5 bp Feature: gene Location: 1258587-1259900 bp Feature: domain Description: obgE Location: 1258596-1259898 bp Feature: domain Description: obgE Location: 1 258596-1 259898 bp Feature: gene Location: 1336701-1336937 bp Feature: domain Description: doc_partner Location: 1336722-1336932 bp Feature: domain Description: doc_partner Location: 1 336722-1 336932 bp Feature: gene Location: 1336934-1337332 bp Feature: domain Description: Doc Location: 1336943-1337303 bp Feature: domain Description: Doc Location: 1 336943-1 337303 bp Feature: gene Location: 1338411-1339799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1338732-1339347 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 338732-1 339347 bp Feature: domain Description: GIIM Note: maturase Location: 1339404-1339620 bp Feature: domain Description: GIIM Note: maturase Location: 1 339404-1 339620 bp Feature: gene Location: 1339898-1340842 bp Feature: domain Description: ldh Location: 1339901-1340837 bp Feature: domain Description: ldh Location: 1 339901 -1 340837 bp Feature: gene Location: 1340920-1341093 bp Feature: gene Location: 1879207-1879707 bp Feature: domain Description: ArdA Location: 1879225-1879696 bp Feature: domain Description: ArdA Location: 1 879225-1 879696 bp Feature: gene Location: 1879720-1879872 bp Feature: gene Location: 1880048-1881958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1880381-1881119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 880381 -1 881 1 1 9 bp Feature: domain Description: HNHc Note: nucleases Location: 1881674-1881839 bp Feature: domain Description: HNHc Note: nucleases Location: 1 881 674-1 881 839 bp Feature: gene Location: 1882838-1884022 bp Feature: domain Description: HTH_XRE Location: 1882868-1883012 bp Feature: domain Description: HTH_XRE Location: 1 882868-1 88301 2 bp Feature: domain Description: Rol_Rep_N Location: 1883045-1883309 bp Feature: domain Description: Rol_Rep_N Location: 1 883045-1 883309 bp Feature: domain Description: Rep_trans Location: 1883333-1883945 bp Feature: domain Description: Rep_trans Location: 1 883333-1 883945 bp Feature: gene Location: 1884557-1885699 bp Feature: domain Description: Dcm Location: 1884560-1885673 bp Feature: domain Description: Dcm Location: 1 884560-1 885673 bp Feature: gene Location: 2798096-2798239 bp Feature: gene Location: 2798332-2799516 bp Feature: domain Description: HTH_XRE Location: 2798362-2798506 bp Feature: domain Description: HTH_XRE Location: 2798362-2798506 bp Feature: domain Description: Rol_Rep_N Location: 2798539-2798803 bp Feature: domain Description: Rol_Rep_N Location: 2798539-2798803 bp Feature: domain Description: Rep_trans Location: 2798827-2799439 bp Feature: domain Description: Rep_trans Location: 2798827-2799439 bp Feature: gene Location: 2800396-2802306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2800729-2801467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2800729-2801 467 bp Feature: domain Description: HNHc Note: nucleases Location: 2802022-2802187 bp Feature: domain Description: HNHc Note: nucleases Location: 2802022-28021 87 bp Feature: gene Location: 2802494-2802634 bp Feature: gene Location: 2802647-2803150 bp Feature: domain Description: ArdA Location: 2802665-2803136 bp Feature: domain Description: ArdA Location: 2802665-28031 36 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dha_L_ycgS (TIGR02365), G6PD_bact (pfam10786), RVT-GII, GIIM (pfam08388), Crp (pfam00325), TnrB3 (COG3559), PRK06019 (phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed), Adenylsuccinate_lyase_1 (cd01360), PRK09362 (phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed), Tra8 (COG2826)
FrsA (COG1073), GAPDH-I (TIGR01534), obgE (PRK12299), doc_partner (TIGR02609), Doc (COG3654), ldh (PRK00066), ArdA (pfam07275), HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106)
Rep_trans (pfam02486), Dcm (COG0270)