myRT

myRT report for GCA_900639635.1_E8927_hybrid_assembly

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Seq: LR135428.1 Enterococcus faecium isolate E8927 genome assembly, chromosome: 1 (2581067 bp)
Overview 1 RT 1: 246638-253029 bp Neighborhood of RT #1 [246638, 253043] FtsK HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 246638-248023 bp Feature: domain Description: FtsK Location: 247247-247880 bp Feature: domain Description: FtsK Location: 247247-247880 bp Feature: gene Location: 248202-249407 bp Feature: domain Description: HTH_XRE Location: 248247-248391 bp Feature: domain Description: HTH_XRE Location: 248247-248391 bp Feature: domain Description: Rol_Rep_N Location: 248418-248685 bp Feature: domain Description: Rol_Rep_N Location: 24841 8-248685 bp Feature: domain Description: Rep_trans Location: 248709-249318 bp Feature: domain Description: Rep_trans Location: 248709-24931 8 bp Feature: gene Location: 250191-252101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250524-251262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 250524-251 262 bp Feature: domain Description: HNHc Note: nucleases Location: 251817-251982 bp Feature: domain Description: HNHc Note: nucleases Location: 251 81 7-251 982 bp Feature: gene Location: 252262-252429 bp Feature: gene Location: 252546-253043 bp Feature: domain Description: ArdA Location: 252564-253029 bp Feature: domain Description: ArdA Location: 252564-253029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FtsK (COG1674), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275)

Seq: LR135429.1 Enterococcus faecium isolate E8927 genome assembly, plasmid: 2 (209872 bp)
Overview 1 RT 1: 11570-21377 bp Neighborhood of RT #1 [11570, 21377] VirD4 VirD4 RVT-GII HNH_4 TraG-D_C Feature: gene Location: 11570-13624 bp Feature: gene Location: 13624-15453 bp Feature: domain Description: VirD4 Location: 14029-14875 bp Feature: domain Description: VirD4 Location: 1402 9-14875 bp Feature: domain Description: VirD4 Location: 15265-15427 bp Feature: domain Description: VirD4 Location: 152 65-1542 7 bp Feature: gene Location: 16148-18064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16487-17222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16487-172 2 2 bp Feature: domain Description: HNH_4 Location: 17816-17921 bp Feature: domain Description: HNH_4 Location: 17816-1792 1 bp Feature: gene Location: 18190-18984 bp Feature: domain Description: TraG-D_C Location: 18193-18499 bp Feature: domain Description: TraG-D_C Location: 18193-18499 bp Feature: gene Location: 18981-21377 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirD4 (COG3505), RVT-GII, HNH_4 (pfam13395), TraG-D_C (pfam12696)