myRT

myRT report for GCA_900639725.1_E8423_hybrid_assembly

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Seq: LR135475.1 Enterococcus faecium isolate E8423 genome assembly, chromosome: 1 (2697636 bp)
Overview 1 RT 1: 398825-403577 bp Neighborhood of RT #1 [398825, 403666] ArdA RVT-GII HNHc HTH_XRE Rol_Rep_N Rep_trans Feature: gene Location: 398825-399322 bp Feature: domain Description: ArdA Location: 398843-399308 bp Feature: domain Description: ArdA Location: 398843-399308 bp Feature: gene Location: 399439-399606 bp Feature: gene Location: 399767-401677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400100-400838 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4001 00-400838 bp Feature: domain Description: HNHc Note: nucleases Location: 401393-401558 bp Feature: domain Description: HNHc Note: nucleases Location: 401 393-401 558 bp Feature: gene Location: 402186-402335 bp Feature: gene Location: 402461-403666 bp Feature: domain Description: HTH_XRE Location: 402506-402650 bp Feature: domain Description: HTH_XRE Location: 402506-402650 bp Feature: domain Description: Rol_Rep_N Location: 402677-402944 bp Feature: domain Description: Rol_Rep_N Location: 402677-402944 bp Feature: domain Description: Rep_trans Location: 402968-403577 bp Feature: domain Description: Rep_trans Location: 402968-403577 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdA (pfam07275), RVT-GII, HNHc (smart00507), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486)

Seq: LR135476.1 Enterococcus faecium isolate E8423 genome assembly, plasmid: 2 (256660 bp)
Overview 1 RT 1: 26205-32058 bp Neighborhood of RT #1 [26205, 32177] VirB4 RVT-GII HNHc Glucosaminidase Peptidase_M23 Feature: gene Location: 26205-27899 bp Feature: domain Description: VirB4 Location: 26523-27207 bp Feature: domain Description: VirB4 Location: 2 652 3-2 72 07 bp Feature: gene Location: 28167-28400 bp Feature: gene Location: 28587-30464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28902-29640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 8902 -2 9640 bp Feature: domain Description: HNHc Note: nucleases Location: 30198-30351 bp Feature: domain Description: HNHc Note: nucleases Location: 30198-30351 bp Feature: gene Location: 30652-30972 bp Feature: gene Location: 30972-32177 bp Feature: domain Description: Glucosaminidase Location: 31248-31644 bp Feature: domain Description: Glucosaminidase Location: 312 48-31644 bp Feature: domain Description: Peptidase_M23 Location: 31821-32058 bp Feature: domain Description: Peptidase_M2 3 Location: 3182 1-32 058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, HNHc (smart00507), Glucosaminidase (pfam01832), Peptidase_M23 (pfam01551)

Seq: LR135477.1 Enterococcus faecium isolate E8423 genome assembly, plasmid: 3 (44000 bp)
Overview 1 RT 1: 30254-35348 bp Neighborhood of RT #1 [30254, 35377] Tra8 RVT-AbiP2 HsdM Rve Feature: gene Location: 30254-30415 bp Feature: gene Location: 30498-31451 bp Feature: domain Description: Tra8 Location: 30501-31428 bp Feature: domain Description: Tra8 Location: 3 0501-3 1428 bp Feature: gene Location: 31429-32904 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 31777-32242 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3 1777-3 2242 bp Feature: gene Location: 33242-34657 bp Feature: domain Description: HsdM Location: 33263-34643 bp Feature: domain Description: HsdM Location: 3 3 263 -3 4643 bp Feature: gene Location: 34691-35377 bp Feature: domain Description: Rve Location: 34700-35348 bp Feature: domain Description: Rve Location: 3 4700-3 53 48 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-AbiP2, HsdM (COG0286), Rve (COG3316)