myRT

myRT report for GCA_900659645.1_AUSMDU00008355

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Seq: LR213452.1 Shigella flexneri strain AUSMDU00008355 genome assembly, chromosome: 1 (4463322 bp)
Overview 1 RT 1: 1516011-1520104 bp 2 RT 2: 2717296-2720210 bp Neighborhood of RT #1 [1516011, 1520169] COG3547 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [2717296, 2720275] RVT-GII GIIM PHA02517 Feature: gene Location: 1516011-1517087 bp Feature: domain Description: COG3547 Location: 1516050-1516971 bp Feature: domain Description: COG3547 Location: 1 51 6050-1 51 6971 bp Feature: gene Location: 1517339-1517542 bp Feature: gene Location: 1517629-1519152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1517902-1518634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 7902-1 51 8634 bp Feature: domain Description: GIIM Note: maturase Location: 1518709-1518907 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 8709-1 51 8907 bp Feature: gene Location: 1519106-1519531 bp Feature: gene Location: 1519744-1520169 bp Feature: domain Description: PHA02517 Location: 1519768-1520104 bp Feature: domain Description: PHA0251 7 Location: 1 51 9768-1 5201 04 bp Feature: gene Location: 2717296-2717439 bp Feature: gene Location: 2717464-2717667 bp Feature: gene Location: 2717735-2719258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2718008-2718740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 8008-271 8740 bp Feature: domain Description: GIIM Note: maturase Location: 2718815-2719013 bp Feature: domain Description: GIIM Note: maturase Location: 271 881 5-271 901 3 bp Feature: gene Location: 2719212-2719637 bp Feature: gene Location: 2719850-2720275 bp Feature: domain Description: PHA02517 Location: 2719874-2720210 bp Feature: domain Description: PHA0251 7 Location: 271 9874-272021 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: LR213453.1 Shigella flexneri strain AUSMDU00008355 genome assembly, plasmid: 2 (82887 bp)
Overview 1 RT 1: 71101-75314 bp Neighborhood of RT #1 [71101, 75314] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 71101-71334 bp Feature: domain Description: DUF905 Location: 71131-71329 bp Feature: domain Description: DUF905 Location: 71131-7132 9 bp Feature: gene Location: 71390-71824 bp Feature: domain Description: PRK13732 Location: 71396-71822 bp Feature: domain Description: PRK13732 Location: 71396-7182 2 bp Feature: gene Location: 72019-73920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72286-73117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72 2 86-73117 bp Feature: domain Description: Intron_maturas2 Location: 73231-73489 bp Feature: domain Description: Intron_maturas2 Location: 732 31-73489 bp Feature: domain Description: HNHc Note: nucleases Location: 73663-73825 bp Feature: domain Description: HNHc Note: nucleases Location: 73663-7382 5 bp Feature: gene Location: 74637-74870 bp Feature: gene Location: 74871-75314 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)