myRT

myRT report for GCA_900659665.1_AUSMDU00008332

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Seq: LR213455.1 Shigella flexneri strain AUSMDU00008332 genome assembly, chromosome: 1 (4633147 bp)
Overview 1 RT 1: 890730-898146 bp 2 RT 2: 1018892-1022319 bp 3 RT 3: 1496580-1500470 bp 4 RT 4: 1737759-1740976 bp 5 RT 5: 2014376-2018528 bp 6 RT 6: 2499553-2503157 bp 7 RT 7: 2813483-2817171 bp 8 RT 8: 3268938-3272889 bp 9 RT 9: 3649857-3654159 bp 10 RT 10: 3671745-3675219 bp Neighborhood of RT #1 [890730, 898148] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Neighborhood of RT #2 [1018892, 1022330] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [1496580, 1500487] InsE PHA02517 RVT-GII GIIM PRK09692 Neighborhood of RT #4 [1737759, 1741041] PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #5 [2014376, 2018563] InsE PHA02517 RVT-GII GIIM PHA02517 YecT Neighborhood of RT #6 [2499553, 2503222] Phage_pRha PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #7 [2813483, 2817575] PHA02517 RVT-GII GIIM tape_meas_nterm Neighborhood of RT #8 [3268938, 3272954] PRK07952 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #9 [3649857, 3654170] PHA02517 RVT-GII GIIM PHA02517 PHA02517 Neighborhood of RT #10 [3671745, 3675219] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 890730-890858 bp Feature: gene Location: 890948-891187 bp Feature: domain Description: PHA02517 Location: 890951-891122 bp Feature: domain Description: PHA0251 7 Location: 890951 -891 1 22 bp Feature: gene Location: 891779-893302 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892052-892784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892052-892784 bp Feature: domain Description: GIIM Note: maturase Location: 892859-893057 bp Feature: domain Description: GIIM Note: maturase Location: 892859-893057 bp Feature: gene Location: 893479-893865 bp Feature: domain Description: PHA02517 Location: 893482-893863 bp Feature: domain Description: PHA0251 7 Location: 893482-893863 bp Feature: gene Location: 894030-898148 bp Feature: domain Description: ESPR Location: 894033-894102 bp Feature: domain Description: ESPR Location: 894033-8941 02 bp Feature: domain Description: Peptidase_S6 Location: 894183-896355 bp Feature: domain Description: Peptidase_S6 Location: 8941 83-896355 bp Feature: domain Description: autotrans_barl Location: 896919-898146 bp Feature: domain Description: autotrans_barl Location: 89691 9-8981 46 bp Feature: gene Location: 1018892-1019194 bp Feature: domain Description: InsE Location: 1018901-1019183 bp Feature: domain Description: InsE Location: 1 01 8901 -1 01 91 83 bp Feature: gene Location: 1019221-1019646 bp Feature: domain Description: PHA02517 Location: 1019245-1019581 bp Feature: domain Description: PHA0251 7 Location: 1 01 9245-1 01 9581 bp Feature: gene Location: 1020238-1021578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1020511-1021243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 02051 1 -1 021 243 bp Feature: domain Description: GIIM Note: maturase Location: 1021318-1021516 bp Feature: domain Description: GIIM Note: maturase Location: 1 021 31 8-1 021 51 6 bp Feature: gene Location: 1021633-1021761 bp Feature: gene Location: 1021926-1022330 bp Feature: domain Description: PHA02517 Location: 1021929-1022319 bp Feature: domain Description: PHA0251 7 Location: 1 021 929-1 02231 9 bp Feature: gene Location: 1496580-1496882 bp Feature: domain Description: InsE Location: 1496589-1496871 bp Feature: domain Description: InsE Location: 1 496589-1 496871 bp Feature: gene Location: 1496909-1497334 bp Feature: domain Description: PHA02517 Location: 1496933-1497269 bp Feature: domain Description: PHA0251 7 Location: 1 496933-1 497269 bp Feature: gene Location: 1497926-1499449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1498199-1498931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4981 99-1 498931 bp Feature: domain Description: GIIM Note: maturase Location: 1499006-1499204 bp Feature: domain Description: GIIM Note: maturase Location: 1 499006-1 499204 bp Feature: gene Location: 1499536-1499721 bp Feature: gene Location: 1499993-1500487 bp Feature: domain Description: PRK09692 Location: 1499999-1500470 bp Feature: domain Description: PRK09692 Location: 1 499999-1 500470 bp Feature: gene Location: 1737759-1738073 bp Feature: gene Location: 1738124-1738570 bp Feature: domain Description: PHA02517 Location: 1738127-1738568 bp Feature: domain Description: PHA0251 7 Location: 1 7381 27-1 738568 bp Feature: gene Location: 1738687-1740210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1738960-1739692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 738960-1 739692 bp Feature: domain Description: GIIM Note: maturase Location: 1739767-1739965 bp Feature: domain Description: GIIM Note: maturase Location: 1 739767-1 739965 bp Feature: gene Location: 1740164-1740589 bp Feature: gene Location: 1740802-1741041 bp Feature: domain Description: PHA02517 Location: 1740805-1740976 bp Feature: domain Description: PHA0251 7 Location: 1 740805-1 740976 bp Feature: gene Location: 2014376-2014702 bp Feature: domain Description: InsE Location: 2014379-2014700 bp Feature: domain Description: InsE Location: 201 4379-201 4700 bp Feature: gene Location: 2014938-2015177 bp Feature: domain Description: PHA02517 Location: 2014941-2015112 bp Feature: domain Description: PHA0251 7 Location: 201 4941 -201 51 1 2 bp Feature: gene Location: 2015769-2017292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2016042-2016774 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 6042-201 6774 bp Feature: domain Description: GIIM Note: maturase Location: 2016849-2017047 bp Feature: domain Description: GIIM Note: maturase Location: 201 6849-201 7047 bp Feature: gene Location: 2017469-2017855 bp Feature: domain Description: PHA02517 Location: 2017472-2017853 bp Feature: domain Description: PHA0251 7 Location: 201 7472-201 7853 bp Feature: gene Location: 2018075-2018563 bp Feature: domain Description: YecT Location: 2018099-2018528 bp Feature: domain Description: YecT Location: 201 8099-201 8528 bp Feature: gene Location: 2499553-2499735 bp Feature: domain Description: Phage_pRha Location: 2499622-2499709 bp Feature: domain Description: Phage_pRha Location: 2499622-2499709 bp Feature: gene Location: 2500113-2500517 bp Feature: domain Description: PHA02517 Location: 2500116-2500506 bp Feature: domain Description: PHA0251 7 Location: 25001 1 6-2500506 bp Feature: gene Location: 2500682-2502205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2500955-2501687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2500955-2501 687 bp Feature: domain Description: GIIM Note: maturase Location: 2501762-2501960 bp Feature: domain Description: GIIM Note: maturase Location: 2501 762-2501 960 bp Feature: gene Location: 2502159-2502584 bp Feature: gene Location: 2502797-2503222 bp Feature: domain Description: PHA02517 Location: 2502821-2503157 bp Feature: domain Description: PHA0251 7 Location: 2502821 -25031 57 bp Feature: gene Location: 2813483-2813662 bp Feature: gene Location: 2813697-2813936 bp Feature: domain Description: PHA02517 Location: 2813700-2813871 bp Feature: domain Description: PHA0251 7 Location: 281 3700-281 3871 bp Feature: gene Location: 2814528-2816051 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2814801-2815533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 281 4801 -281 5533 bp Feature: domain Description: GIIM Note: maturase Location: 2815608-2815806 bp Feature: domain Description: GIIM Note: maturase Location: 281 5608-281 5806 bp Feature: gene Location: 2816138-2816323 bp Feature: gene Location: 2816595-2817575 bp Feature: domain Description: tape_meas_nterm Location: 2816973-2817171 bp Feature: domain Description: tape_meas_nterm Location: 281 6973-281 71 71 bp Feature: gene Location: 3268938-3269816 bp Feature: domain Description: PRK07952 Location: 3269190-3269805 bp Feature: domain Description: PRK07952 Location: 32691 90-3269805 bp Feature: gene Location: 3269845-3270249 bp Feature: domain Description: PHA02517 Location: 3269848-3270238 bp Feature: domain Description: PHA0251 7 Location: 3269848-3270238 bp Feature: gene Location: 3270414-3271937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3270687-3271419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3270687-3271 41 9 bp Feature: domain Description: GIIM Note: maturase Location: 3271494-3271692 bp Feature: domain Description: GIIM Note: maturase Location: 3271 494-3271 692 bp Feature: gene Location: 3271891-3272316 bp Feature: gene Location: 3272529-3272954 bp Feature: domain Description: PHA02517 Location: 3272553-3272889 bp Feature: domain Description: PHA0251 7 Location: 3272553-3272889 bp Feature: gene Location: 3649857-3649985 bp Feature: gene Location: 3650071-3650310 bp Feature: domain Description: PHA02517 Location: 3650074-3650245 bp Feature: domain Description: PHA0251 7 Location: 3650074-3650245 bp Feature: gene Location: 3650902-3652425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3651175-3651907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3651 1 75-3651 907 bp Feature: domain Description: GIIM Note: maturase Location: 3651982-3652180 bp Feature: domain Description: GIIM Note: maturase Location: 3651 982-36521 80 bp Feature: gene Location: 3652602-3652988 bp Feature: domain Description: PHA02517 Location: 3652605-3652986 bp Feature: domain Description: PHA0251 7 Location: 3652605-3652986 bp Feature: gene Location: 3653352-3654170 bp Feature: domain Description: PHA02517 Location: 3653367-3654159 bp Feature: domain Description: PHA0251 7 Location: 3653367-36541 59 bp Feature: gene Location: 3671745-3671873 bp Feature: gene Location: 3671959-3672198 bp Feature: domain Description: PHA02517 Location: 3671962-3672133 bp Feature: domain Description: PHA0251 7 Location: 3671 962-36721 33 bp Feature: gene Location: 3672790-3674313 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3673063-3673795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3673063-3673795 bp Feature: domain Description: GIIM Note: maturase Location: 3673870-3674068 bp Feature: domain Description: GIIM Note: maturase Location: 3673870-3674068 bp Feature: gene Location: 3674490-3674876 bp Feature: domain Description: PHA02517 Location: 3674493-3674874 bp Feature: domain Description: PHA0251 7 Location: 3674493-3674874 bp Feature: gene Location: 3674950-3675219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), InsE (COG2963), PRK09692 (Integrase; provisional), YecT (COG3755), Phage_pRha (pfam09669)
tape_meas_nterm (TIGR02675), PRK07952 (DNA replication protein DnaC; Validated)

Seq: LR213456.1 Shigella flexneri strain AUSMDU00008332 genome assembly, plasmid: 2 (234171 bp)
Overview 1 RT 1: 2978-6113 bp 2 RT 2: 92011-95668 bp 3 RT 3: 110480-113786 bp 4 RT 4: 131944-135270 bp 5 RT 5: 205438-208665 bp Neighborhood of RT #1 [2978, 6113] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Neighborhood of RT #2 [92011, 95733] Pyocin_S PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [110480, 113851] DDE_Tnp_IS66 DDE_Tnp_IS66_C PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #4 [131944, 135284] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Neighborhood of RT #5 [205438, 208730] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 2978-3727 bp Feature: domain Description: PAP2_acid_phosphatase Location: 3053-3707 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 3053-3707 bp Feature: gene Location: 4123-4323 bp Feature: domain Description: Tra5 Location: 4132-4306 bp Feature: domain Description: Tra5 Location: 4132 -4306 bp Feature: gene Location: 4336-5139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4636-5131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4636-5131 bp Feature: gene Location: 5192-5518 bp Feature: domain Description: GIIM Note: maturase Location: 5225-5444 bp Feature: domain Description: GIIM Note: maturase Location: 52 2 5-5444 bp Feature: gene Location: 5871-6113 bp Feature: gene Location: 92011-92286 bp Feature: domain Description: Pyocin_S Location: 92041-92185 bp Feature: domain Description: Pyocin_S Location: 92 041-92 185 bp Feature: gene Location: 92771-93262 bp Feature: domain Description: PHA02517 Location: 92774-93179 bp Feature: domain Description: PHA02 517 Location: 92 774-93179 bp Feature: gene Location: 93379-94902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93652-94384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93652 -94384 bp Feature: domain Description: GIIM Note: maturase Location: 94459-94657 bp Feature: domain Description: GIIM Note: maturase Location: 94459-94657 bp Feature: gene Location: 94856-95281 bp Feature: gene Location: 95494-95733 bp Feature: domain Description: PHA02517 Location: 95497-95668 bp Feature: domain Description: PHA02 517 Location: 95497-95668 bp Feature: gene Location: 110480-110968 bp Feature: domain Description: DDE_Tnp_IS66 Location: 110546-110813 bp Feature: domain Description: DDE_Tnp_IS66 Location: 110546-110813 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 110837-110945 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 110837-110945 bp Feature: gene Location: 110934-111380 bp Feature: domain Description: PHA02517 Location: 110937-111378 bp Feature: domain Description: PHA02 517 Location: 110937-111378 bp Feature: gene Location: 111497-113020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111770-112502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111770-112 502 bp Feature: domain Description: GIIM Note: maturase Location: 112577-112775 bp Feature: domain Description: GIIM Note: maturase Location: 112 577-112 775 bp Feature: gene Location: 112974-113399 bp Feature: gene Location: 113612-113851 bp Feature: domain Description: PHA02517 Location: 113615-113786 bp Feature: domain Description: PHA02 517 Location: 113615-113786 bp Feature: gene Location: 131944-132591 bp Feature: domain Description: PHA02517 Location: 131947-132589 bp Feature: domain Description: PHA02 517 Location: 131947-132 589 bp Feature: gene Location: 132685-132816 bp Feature: domain Description: DDE_Tnp_IS66 Location: 132697-132790 bp Feature: domain Description: DDE_Tnp_IS66 Location: 132 697-132 790 bp Feature: gene Location: 133293-134510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133479-134133 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133479-134133 bp Feature: domain Description: GIIM Note: maturase Location: 134211-134433 bp Feature: domain Description: GIIM Note: maturase Location: 1342 11-134433 bp Feature: gene Location: 134626-134772 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 134638-134749 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 134638-134749 bp Feature: gene Location: 134799-135284 bp Feature: domain Description: COG3547 Location: 134817-135270 bp Feature: domain Description: COG3547 Location: 134817-1352 70 bp Feature: gene Location: 205438-205680 bp Feature: gene Location: 205812-206351 bp Feature: domain Description: PHA02517 Location: 206079-206349 bp Feature: domain Description: PHA02 517 Location: 2 06079-2 06349 bp Feature: gene Location: 206376-207899 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206649-207381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 06649-2 07381 bp Feature: domain Description: GIIM Note: maturase Location: 207456-207654 bp Feature: domain Description: GIIM Note: maturase Location: 2 07456-2 07654 bp Feature: gene Location: 207853-208278 bp Feature: gene Location: 208491-208730 bp Feature: domain Description: PHA02517 Location: 208494-208665 bp Feature: domain Description: PHA02 517 Location: 2 08494-2 08665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, GIIM (pfam08388), Pyocin_S (pfam06958), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )