myRT

myRT report for GCA_900682675.1_P_marincola_YSy11

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Seq: LR215729.1 Pseudomonas marincola strain YSy11 genome assembly, chromosome: PMYSY11 (4814646 bp)
Overview 1 RT 1: 1906171-1914027 bp 2 RT 2: 2923895-2929535 bp Neighborhood of RT #1 [1906171, 1914182] COG3450 YcgI GcvT RVT-GII GIIM DDE_Tnp_1_4 HTH_Tnp_1 HTH_Tnp_1 HTH_23 Tra5 Neighborhood of RT #2 [2923895, 2929535] groES groEL RVT_N RVT-GII GIIM HNH Feature: gene Location: 1906171-1906527 bp Ori: VEV96800.1 Feature: domain Description: COG3450 Location: 1906210-1906519 bp Feature: domain Description: COG3450 Location: 1 90621 0-1 90651 9 bp Feature: gene Location: 1906857-1909178 bp Ori: VEV96801.1 Feature: domain Description: YcgI Location: 1907313-1908030 bp Feature: domain Description: YcgI Location: 1 90731 3-1 908030 bp Feature: domain Description: GcvT Location: 1908033-1909173 bp Feature: domain Description: GcvT Location: 1 908033-1 9091 73 bp Feature: gene Location: 1909758-1911083 bp Ori: VEV96802.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1910019-1910634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 001 9-1 91 0634 bp Feature: domain Description: GIIM Note: maturase Location: 1910688-1910916 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 0688-1 91 091 6 bp Feature: gene Location: 1911444-1912649 bp Ori: VEV96803.1 Feature: domain Description: DDE_Tnp_1_4 Location: 1911450-1912641 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 1 91 1 450-1 91 2641 bp Feature: gene Location: 1912671-1914182 bp Ori: VEV96804.1 Feature: domain Description: HTH_Tnp_1 Location: 1912701-1912797 bp Feature: domain Description: HTH_Tnp_1 Location: 1 91 2701 -1 91 2797 bp Feature: domain Description: HTH_Tnp_1 Location: 1912818-1913043 bp Feature: domain Description: HTH_Tnp_1 Location: 1 91 281 8-1 91 3043 bp Feature: domain Description: HTH_23 Location: 1913151-1913265 bp Feature: domain Description: HTH_23 Location: 1 91 31 51 -1 91 3265 bp Feature: domain Description: Tra5 Location: 1913304-1914027 bp Feature: domain Description: Tra5 Location: 1 91 3304-1 91 4027 bp Feature: gene Location: 2923895-2924188 bp Ori: VEV97795.1 Gene: groES Feature: domain Description: groES Location: 2923898-2924183 bp Feature: domain Description: groES Location: 2923898-29241 83 bp Feature: gene Location: 2924236-2925882 bp Ori: VEV97796.1 Gene: groEL Feature: domain Description: groEL Location: 2924242-2925862 bp Feature: domain Description: groEL Location: 2924242-2925862 bp Feature: gene Location: 2926896-2928548 bp Ori: VEV97797.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2926950-2927184 bp Feature: domain Description: RVT_N Location: 2926950-29271 84 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2927238-2927883 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2927238-2927883 bp Feature: domain Description: GIIM Note: maturase Location: 2927934-2928168 bp Feature: domain Description: GIIM Note: maturase Location: 2927934-29281 68 bp Feature: domain Description: HNH Note: nucleases Location: 2928408-2928546 bp Feature: domain Description: HNH Note: nucleases Location: 2928408-2928546 bp Feature: gene Location: 2929032-2929253 bp Feature: gene Location: 2929311-2929535 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3450 (Predicted enzyme of the cupin superfamily ), YcgI (COG3665), GcvT (COG0404), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_4 (pfam13701), HTH_Tnp_1 (pfam01527), HTH_23 (pfam13384), Tra5 (COG2801), groES (PRK14533)
groEL (PRK12852), RVT_N (pfam13655), HNH (pfam01844)