myRT

myRT report for GCA_900683775.1_ASM90068377v1

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Seq: LR215983.1 Eubacterium limosum isolate Eubacterium limosum 81C1 genome assembly, chromosome: 1 (4740532 bp)
Overview 1 RT 1: 340395-343893 bp 2 RT 2: 1151806-1165814 bp 3 RT 3: 1171219-1176808 bp 4 RT 4: 1183759-1188696 bp 5 RT 5: 1799349-1809352 bp 6 RT 6: 1999267-2004107 bp 7 RT 7: 3421597-3427755 bp Neighborhood of RT #1 [340395, 343893] RVT-DGRs Neighborhood of RT #2 [1151806, 1165814] YodL YtxK COG4646 COG4646 RVT-GII RVT-GII Intron_maturas2 HNHc KOG1000 Neighborhood of RT #3 [1171219, 1176816] VirD4 RVT-GII Intron_maturas2 T4SS-DNA_transf TrbC Neighborhood of RT #4 [1183759, 1188815] RVT-GII HNHc PrgI VirB4_CagE Neighborhood of RT #5 [1799349, 1809684] HTH_XRE KOG1000 RVT-GII Intron_maturas2 HNHc AdoMet_MTases COG4646 Neighborhood of RT #6 [1999267, 2004107] Spr RVT-GII HNHc Neighborhood of RT #7 [3421597, 3427784] VirB4_CagE VirB4_CagE RVT-GII HNHc N6_N4_Mtase Feature: gene Location: 340395-341648 bp Feature: gene Location: 341761-342006 bp Feature: gene Location: 342081-343226 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 342291-342993 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 342291 -342993 bp Feature: gene Location: 343168-343521 bp Feature: gene Location: 343558-343893 bp Feature: gene Location: 1151806-1152378 bp Feature: domain Description: YodL Location: 1152073-1152358 bp Feature: domain Description: YodL Location: 1 1 52073-1 1 52358 bp Feature: gene Location: 1152383-1158541 bp Feature: domain Description: YtxK Location: 1155266-1155662 bp Feature: domain Description: YtxK Location: 1 1 55266-1 1 55662 bp Feature: domain Description: COG4646 Location: 1155743-1156448 bp Feature: domain Description: COG4646 Location: 1 1 55743-1 1 56448 bp Feature: domain Description: COG4646 Location: 1156532-1158407 bp Feature: domain Description: COG4646 Location: 1 1 56532-1 1 58407 bp Feature: gene Location: 1159191-1161221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1159626-1160352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 59626-1 1 60352 bp Feature: gene Location: 1161286-1161564 bp Feature: gene Location: 1161793-1162104 bp Feature: gene Location: 1162076-1163923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1162394-1163186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 62394-1 1 631 86 bp Feature: domain Description: Intron_maturas2 Location: 1163279-1163576 bp Feature: domain Description: Intron_maturas2 Location: 1 1 63279-1 1 63576 bp Feature: domain Description: HNHc Note: nucleases Location: 1163726-1163900 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 63726-1 1 63900 bp Feature: gene Location: 1164042-1165022 bp Feature: domain Description: KOG1000 Location: 1164069-1164294 bp Feature: domain Description: KOG1 000 Location: 1 1 64069-1 1 64294 bp Feature: gene Location: 1165275-1165814 bp Feature: gene Location: 1171219-1172118 bp Feature: gene Location: 1172134-1173516 bp Feature: domain Description: VirD4 Location: 1172356-1173487 bp Feature: domain Description: VirD4 Location: 1 1 72356-1 1 73487 bp Feature: gene Location: 1174066-1175895 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1174342-1175176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 74342-1 1 751 76 bp Feature: domain Description: Intron_maturas2 Location: 1175260-1175602 bp Feature: domain Description: Intron_maturas2 Location: 1 1 75260-1 1 75602 bp Feature: gene Location: 1176051-1176500 bp Feature: domain Description: T4SS-DNA_transf Location: 1176054-1176276 bp Feature: domain Description: T4SS-DNA_transf Location: 1 1 76054-1 1 76276 bp Feature: gene Location: 1176478-1176816 bp Feature: domain Description: TrbC Location: 1176523-1176808 bp Feature: domain Description: TrbC Location: 1 1 76523-1 1 76808 bp Feature: gene Location: 1183759-1183890 bp Feature: gene Location: 1183912-1184100 bp Feature: gene Location: 1184063-1185994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1184399-1185143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 84399-1 1 851 43 bp Feature: domain Description: HNHc Note: nucleases Location: 1185689-1185857 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 85689-1 1 85857 bp Feature: gene Location: 1186154-1186510 bp Feature: domain Description: PrgI Location: 1186157-1186391 bp Feature: domain Description: PrgI Location: 1 1 861 57-1 1 86391 bp Feature: gene Location: 1186494-1188815 bp Feature: domain Description: VirB4_CagE Location: 1186557-1188696 bp Feature: domain Description: VirB4_CagE Location: 1 1 86557-1 1 88696 bp Feature: gene Location: 1799349-1799714 bp Feature: domain Description: HTH_XRE Location: 1799355-1799523 bp Feature: domain Description: HTH_XRE Location: 1 799355-1 799523 bp Feature: gene Location: 1799783-1800715 bp Feature: domain Description: KOG1000 Location: 1799792-1799990 bp Feature: domain Description: KOG1 000 Location: 1 799792-1 799990 bp Feature: gene Location: 1800882-1802693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1801164-1801956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 801 1 64-1 801 956 bp Feature: domain Description: Intron_maturas2 Location: 1802049-1802346 bp Feature: domain Description: Intron_maturas2 Location: 1 802049-1 802346 bp Feature: domain Description: HNHc Note: nucleases Location: 1802496-1802670 bp Feature: domain Description: HNHc Note: nucleases Location: 1 802496-1 802670 bp Feature: gene Location: 1802701-1803012 bp Feature: gene Location: 1803241-1809684 bp Feature: domain Description: AdoMet_MTases Location: 1806268-1806616 bp Feature: domain Description: AdoMet_MTases Location: 1 806268-1 80661 6 bp Feature: domain Description: COG4646 Location: 1806817-1809352 bp Feature: domain Description: COG4646 Location: 1 80681 7-1 809352 bp Feature: gene Location: 1999267-2001213 bp Feature: domain Description: Spr Location: 2000851-2001196 bp Feature: domain Description: Spr Location: 2000851 -2001 1 96 bp Feature: gene Location: 2001245-2001379 bp Feature: gene Location: 2001636-2003516 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2001969-2002686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2001 969-2002686 bp Feature: domain Description: HNHc Note: nucleases Location: 2003268-2003406 bp Feature: domain Description: HNHc Note: nucleases Location: 2003268-2003406 bp Feature: gene Location: 2003715-2003963 bp Feature: gene Location: 2003973-2004107 bp Feature: gene Location: 3421597-3423825 bp Feature: domain Description: VirB4_CagE Location: 3421732-3422170 bp Feature: domain Description: VirB4_CagE Location: 3421 732-34221 70 bp Feature: domain Description: VirB4_CagE Location: 3422416-3423799 bp Feature: domain Description: VirB4_CagE Location: 342241 6-3423799 bp Feature: gene Location: 3424110-3424358 bp Feature: gene Location: 3424557-3426437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3424890-3425607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3424890-3425607 bp Feature: domain Description: HNHc Note: nucleases Location: 3426189-3426327 bp Feature: domain Description: HNHc Note: nucleases Location: 34261 89-3426327 bp Feature: gene Location: 3426619-3426828 bp Feature: gene Location: 3426825-3427784 bp Feature: domain Description: N6_N4_Mtase Location: 3426903-3427755 bp Feature: domain Description: N6_N4_Mtase Location: 3426903-3427755 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, YodL (pfam14191), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), VirD4 (COG3505), T4SS-DNA_transf (pfam02534)
TrbC (pfam04956), PrgI (pfam12666), VirB4_CagE (TIGR00929), HTH_XRE (smart00530), AdoMet_MTases (cl17173), Spr (COG0791), N6_N4_Mtase (pfam01555)