myRT

myRT report for GCA_900747775.1_VREC0761_Chromosome

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Seq: LR536430.1 Escherichia coli isolate f974b26a-5e81-11e8-bf7f-3c4a9275d6c8 genome assembly, chromosome: VREC0761 (4975029 bp)
Overview 1 RT 1: 428347-435124 bp 2 RT 2: 446722-451296 bp 3 RT 3: 1028598-1033172 bp 4 RT 4: 3639087-3643327 bp 5 RT 5: 4809549-4814873 bp 6 RT 6: 4936715-4941114 bp Neighborhood of RT #1 [428347, 435303] SSL2 RVT-Retrons COG3950 TIGR02646 Neighborhood of RT #2 [446722, 451361] Mrr_cat beta_rpt_yvtn PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #3 [1028598, 1033172] CoiA PRK13889 RVT-Retrons HTH_XRE Neighborhood of RT #4 [3639087, 3643392] IS285 RVT-GII GIIM PHA02517 Neighborhood of RT #5 [4809549, 4814989] HTH_38 Tra8 RVT-GII GIIM PHA02517 COG3547 Neighborhood of RT #6 [4936715, 4941179] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM PHA02517 Feature: gene Location: 428347-431337 bp Feature: domain Description: SSL2 Location: 428503-429481 bp Feature: domain Description: SSL2 Location: 428503-429481 bp Feature: gene Location: 431570-431770 bp Feature: gene Location: 432066-433001 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 432168-432768 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4321 68-432768 bp Feature: gene Location: 432998-434650 bp Feature: domain Description: COG3950 Location: 433196-434612 bp Feature: domain Description: COG3950 Location: 4331 96-43461 2 bp Feature: gene Location: 434653-435303 bp Feature: domain Description: TIGR02646 Location: 434719-435124 bp Feature: domain Description: TIGR02646 Location: 43471 9-4351 24 bp Feature: gene Location: 446722-448155 bp Feature: domain Description: Mrr_cat Location: 446737-447052 bp Feature: domain Description: Mrr_cat Location: 446737-447052 bp Feature: domain Description: beta_rpt_yvtn Location: 447355-447424 bp Feature: domain Description: beta_rpt_yvtn Location: 447355-447424 bp Feature: gene Location: 448204-448650 bp Feature: domain Description: PHA02517 Location: 448207-448648 bp Feature: domain Description: PHA0251 7 Location: 448207-448648 bp Feature: gene Location: 448767-450290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449040-449772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449040-449772 bp Feature: domain Description: GIIM Note: maturase Location: 449847-450045 bp Feature: domain Description: GIIM Note: maturase Location: 449847-450045 bp Feature: gene Location: 450244-450669 bp Feature: gene Location: 450882-451361 bp Feature: domain Description: PHA02517 Location: 450942-451296 bp Feature: domain Description: PHA0251 7 Location: 450942-451 296 bp Feature: gene Location: 1028598-1029245 bp Feature: domain Description: CoiA Location: 1028679-1028817 bp Feature: domain Description: CoiA Location: 1 028679-1 02881 7 bp Feature: gene Location: 1029913-1031415 bp Feature: domain Description: PRK13889 Location: 1029916-1030498 bp Feature: domain Description: PRK1 3889 Location: 1 02991 6-1 030498 bp Feature: gene Location: 1031492-1032592 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1031633-1032185 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 031 633-1 0321 85 bp Feature: gene Location: 1032585-1032866 bp Feature: domain Description: HTH_XRE Location: 1032600-1032765 bp Feature: domain Description: HTH_XRE Location: 1 032600-1 032765 bp Feature: gene Location: 1032957-1033172 bp Feature: gene Location: 3639087-3640385 bp Feature: domain Description: IS285 Location: 3639117-3640275 bp Feature: domain Description: IS285 Location: 36391 1 7-3640275 bp Feature: gene Location: 3640580-3640765 bp Feature: gene Location: 3640852-3642375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3641125-3641857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3641 1 25-3641 857 bp Feature: domain Description: GIIM Note: maturase Location: 3641932-3642130 bp Feature: domain Description: GIIM Note: maturase Location: 3641 932-36421 30 bp Feature: gene Location: 3642329-3642754 bp Feature: gene Location: 3642967-3643392 bp Feature: domain Description: PHA02517 Location: 3642991-3643327 bp Feature: domain Description: PHA0251 7 Location: 3642991 -3643327 bp Feature: gene Location: 4809549-4810700 bp Feature: domain Description: HTH_38 Location: 4809558-4809672 bp Feature: domain Description: HTH_38 Location: 4809558-4809672 bp Feature: domain Description: Tra8 Location: 4809708-4810689 bp Feature: domain Description: Tra8 Location: 4809708-481 0689 bp Feature: gene Location: 4810828-4811217 bp Feature: gene Location: 4811848-4813371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4812121-4812853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 481 21 21 -481 2853 bp Feature: domain Description: GIIM Note: maturase Location: 4812928-4813126 bp Feature: domain Description: GIIM Note: maturase Location: 481 2928-481 31 26 bp Feature: gene Location: 4813500-4813694 bp Feature: domain Description: PHA02517 Location: 4813503-4813659 bp Feature: domain Description: PHA0251 7 Location: 481 3503-481 3659 bp Feature: gene Location: 4813913-4814989 bp Feature: domain Description: COG3547 Location: 4813952-4814873 bp Feature: domain Description: COG3547 Location: 481 3952-481 4873 bp Feature: gene Location: 4936715-4938250 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4936832-4937045 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4936832-4937045 bp Feature: domain Description: zf-IS66 Location: 4937066-4937198 bp Feature: domain Description: zf-IS66 Location: 4937066-49371 98 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4937243-4938098 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4937243-4938098 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 4938119-4938230 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 49381 1 9-4938230 bp Feature: gene Location: 4938346-4938552 bp Feature: gene Location: 4938639-4940162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4938912-4939644 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 493891 2-4939644 bp Feature: domain Description: GIIM Note: maturase Location: 4939719-4939917 bp Feature: domain Description: GIIM Note: maturase Location: 493971 9-493991 7 bp Feature: gene Location: 4940116-4940541 bp Feature: gene Location: 4940754-4941179 bp Feature: domain Description: PHA02517 Location: 4940778-4941114 bp Feature: domain Description: PHA0251 7 Location: 4940778-4941 1 1 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SSL2 (COG1061), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein), Mrr_cat (pfam04471), beta_rpt_yvtn (TIGR02276), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), CoiA (pfam06054)
PRK13889 (conjugal transfer relaxase TraA; Provisional), HTH_XRE (smart00530), IS285 (COG3328), HTH_38 (pfam13936), Tra8 (COG2826), COG3547 (Transposase ), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)