myRT

myRT report for GCA_900747785.1_VREC0864_Chromosome

Download annotations/find similar RTs

Seq: LR536431.1 Escherichia coli isolate f9610206-5e81-11e8-bf7f-3c4a9275d6c8 genome assembly, chromosome: VREC0864 (5114416 bp)
Overview 1 RT 1: 83893-87941 bp 2 RT 2: 2517739-2521765 bp 3 RT 3: 3015126-3021818 bp 4 RT 4: 3941810-3946396 bp Neighborhood of RT #1 [83893, 88006] IS5 PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [2517739, 2521881] RVT-GII GIIM PHA02517 COG3547 Neighborhood of RT #3 [3015126, 3021818] TIGR02646 COG3950 RVT-Retrons Neighborhood of RT #4 [3941810, 3946396] HTH_38 Tra8 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 83893-84873 bp Feature: domain Description: IS5 Location: 84079-84850 bp Feature: domain Description: IS5 Location: 84079-84850 bp Feature: gene Location: 84924-85358 bp Feature: domain Description: PHA02517 Location: 84927-85350 bp Feature: domain Description: PHA0251 7 Location: 84927-85350 bp Feature: gene Location: 85481-87004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85754-86486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85754-86486 bp Feature: domain Description: GIIM Note: maturase Location: 86561-86759 bp Feature: domain Description: GIIM Note: maturase Location: 86561 -86759 bp Feature: gene Location: 86958-87383 bp Feature: gene Location: 87596-88006 bp Feature: domain Description: PHA02517 Location: 87602-87941 bp Feature: domain Description: PHA0251 7 Location: 87602-87941 bp Feature: gene Location: 2517739-2517939 bp Feature: gene Location: 2517955-2518446 bp Feature: gene Location: 2518740-2520263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2519013-2519745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 901 3-251 9745 bp Feature: domain Description: GIIM Note: maturase Location: 2519820-2520018 bp Feature: domain Description: GIIM Note: maturase Location: 251 9820-252001 8 bp Feature: gene Location: 2520428-2520586 bp Feature: domain Description: PHA02517 Location: 2520431-2520551 bp Feature: domain Description: PHA0251 7 Location: 2520431 -2520551 bp Feature: gene Location: 2520805-2521881 bp Feature: domain Description: COG3547 Location: 2520844-2521765 bp Feature: domain Description: COG3547 Location: 2520844-2521 765 bp Feature: gene Location: 3015126-3015857 bp Feature: domain Description: TIGR02646 Location: 3015225-3015735 bp Feature: domain Description: TIGR02646 Location: 301 5225-301 5735 bp Feature: gene Location: 3015857-3017482 bp Feature: domain Description: COG3950 Location: 3016031-3017384 bp Feature: domain Description: COG3950 Location: 301 6031 -301 7384 bp Feature: gene Location: 3017487-3018419 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3017586-3018183 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 301 7586-301 81 83 bp Feature: gene Location: 3018851-3020323 bp Feature: gene Location: 3021366-3021818 bp Feature: gene Location: 3941810-3942961 bp Feature: domain Description: HTH_38 Location: 3941819-3941933 bp Feature: domain Description: HTH_38 Location: 3941 81 9-3941 933 bp Feature: domain Description: Tra8 Location: 3941969-3942950 bp Feature: domain Description: Tra8 Location: 3941 969-3942950 bp Feature: gene Location: 3943080-3943523 bp Feature: domain Description: PHA02517 Location: 3943116-3943458 bp Feature: domain Description: PHA0251 7 Location: 39431 1 6-3943458 bp Feature: gene Location: 3944115-3945638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3944388-3945120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3944388-39451 20 bp Feature: domain Description: GIIM Note: maturase Location: 3945195-3945393 bp Feature: domain Description: GIIM Note: maturase Location: 39451 95-3945393 bp Feature: gene Location: 3945755-3946195 bp Feature: domain Description: PHA02517 Location: 3945758-3946184 bp Feature: domain Description: PHA0251 7 Location: 3945758-39461 84 bp Feature: gene Location: 3946220-3946396 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, HTH_38 (pfam13936), Tra8 (COG2826)