myRT

myRT report for GCA_901472595.1_36340_C01

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Seq: LR590474.1 Pseudomonas aeruginosa strain NCTC13618 genome assembly, chromosome: 1 (6788588 bp)
Overview 1 RT 1: 624376-633094 bp 2 RT 2: 1077103-1084773 bp Neighborhood of RT #1 [624376, 633153] NERD COG3177 RVT_N RVT-GII GIIM HNH EAL PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 Neighborhood of RT #2 [1077103, 1084970] PBP2_PnhD_2 ABC_phnC RVT-GII GIIM CHD CHD Feature: gene Location: 624376-624711 bp Ori: VTP99372.1 Feature: domain Description: NERD Location: 624475-624646 bp Feature: domain Description: NERD Location: 624475-624646 bp Feature: gene Location: 624829-625926 bp Ori: VTP99376.1 Feature: domain Description: COG3177 Location: 624847-625810 bp Feature: domain Description: COG31 77 Location: 624847-62581 0 bp Feature: gene Location: 626651-628336 bp Ori: VTP99380.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 626708-626948 bp Feature: domain Description: RVT_N Location: 626708-626948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 626996-627632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 626996-627632 bp Feature: domain Description: GIIM Note: maturase Location: 627686-627917 bp Feature: domain Description: GIIM Note: maturase Location: 627686-62791 7 bp Feature: domain Description: HNH Note: nucleases Location: 628169-628307 bp Feature: domain Description: HNH Note: nucleases Location: 6281 69-628307 bp Feature: gene Location: 629417-629599 bp Ori: VTP99385.1 Gene: yhjK Feature: domain Description: EAL Location: 629423-629561 bp Feature: domain Description: EAL Location: 629423-629561 bp Feature: gene Location: 629584-633153 bp Ori: VTP99389.1 Gene: gmr_2 Feature: domain Description: PBP2_BvgS_HisK_like Location: 629692-630349 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 629692-630349 bp Feature: domain Description: PRK09776 Location: 630562-631033 bp Feature: domain Description: PRK09776 Location: 630562-631 033 bp Feature: domain Description: PAS Location: 631210-631615 bp Feature: domain Description: PAS Location: 631 21 0-631 61 5 bp Feature: domain Description: PRK10060 Location: 631624-633094 bp Feature: domain Description: PRK1 0060 Location: 631 624-633094 bp Feature: gene Location: 1077103-1077966 bp Ori: VTQ01067.1 Gene: phnD_1 Feature: domain Description: PBP2_PnhD_2 Location: 1077184-1077925 bp Feature: domain Description: PBP2_PnhD_2 Location: 1 0771 84-1 077925 bp Feature: gene Location: 1077963-1078790 bp Ori: VTQ01071.1 Gene: phnC_1 Feature: domain Description: ABC_phnC Location: 1077993-1078707 bp Feature: domain Description: ABC_phnC Location: 1 077993-1 078707 bp Feature: gene Location: 1080163-1081431 bp Ori: VTQ01075.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1080376-1081033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 080376-1 081 033 bp Feature: domain Description: GIIM Note: maturase Location: 1081111-1081333 bp Feature: domain Description: GIIM Note: maturase Location: 1 081 1 1 1 -1 081 333 bp Feature: gene Location: 1082163-1082342 bp Feature: gene Location: 1083426-1084970 bp Ori: VTQ01083.1 Feature: domain Description: CHD Location: 1083642-1084056 bp Feature: domain Description: CHD Location: 1 083642-1 084056 bp Feature: domain Description: CHD Location: 1084284-1084773 bp Feature: domain Description: CHD Location: 1 084284-1 084773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), EAL (smart00052), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PBP2_PnhD_2 (cd13572), ABC_phnC (TIGR02315), CHD (cd07302)