myRT

myRT report for GCA_901482615.1_45076_A01

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Seq: LR590482.1 Pseudomonas synxantha strain NCTC10696 genome assembly, chromosome: 1 (6841780 bp)
Overview 1 RT 1: 983242-989438 bp 2 RT 2: 1786405-1792904 bp 3 RT 3: 4079638-4085911 bp Neighborhood of RT #1 [983242, 989438] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT_N RVT-GII GIIM ACR3 Neighborhood of RT #2 [1786405, 1792904] Acetyltransf_7 Acetyltransf_3 RVT-UG8 RVT-UG3 Neighborhood of RT #3 [4079638, 4085922] TraI_2 TraI_2_C RVT-UG7 Mrr_cat Tra5 Feature: gene Location: 983242-983577 bp Ori: VTQ91133.1 Feature: domain Description: TnpB_IS66 Location: 983260-983548 bp Feature: domain Description: TnpB_IS66 Location: 983260-983548 bp Feature: gene Location: 983639-984967 bp Ori: VTQ91138.1 Gene: tnpC1_2 Feature: domain Description: LZ_Tnp_IS66 Location: 983771-983978 bp Feature: domain Description: LZ_Tnp_IS66 Location: 983771 -983978 bp Feature: domain Description: zf-IS66 Location: 984017-984131 bp Feature: domain Description: zf-IS66 Location: 98401 7-9841 31 bp Feature: domain Description: DDE_Tnp_IS66 Location: 984173-984947 bp Feature: domain Description: DDE_Tnp_IS66 Location: 9841 73-984947 bp Feature: gene Location: 985525-987186 bp Ori: VTQ91143.1 Gene: ltrA Feature: domain Description: RVT_N Location: 985570-985813 bp Feature: domain Description: RVT_N Location: 985570-98581 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985858-986494 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 985858-986494 bp Feature: domain Description: GIIM Note: maturase Location: 986551-986779 bp Feature: domain Description: GIIM Note: maturase Location: 986551 -986779 bp Feature: gene Location: 987551-988513 bp Ori: VTQ91148.1 Feature: domain Description: ACR3 Location: 987566-988493 bp Feature: domain Description: ACR3 Location: 987566-988493 bp Feature: gene Location: 989307-989438 bp Feature: gene Location: 1786405-1786887 bp Ori: VTQ95437.1 Feature: domain Description: Acetyltransf_7 Location: 1786594-1786816 bp Feature: domain Description: Acetyltransf_7 Location: 1 786594-1 78681 6 bp Feature: gene Location: 1787009-1787524 bp Ori: VTQ95443.1 Feature: domain Description: Acetyltransf_3 Location: 1787051-1787456 bp Feature: domain Description: Acetyltransf_3 Location: 1 787051 -1 787456 bp Feature: gene Location: 1787784-1789832 bp Ori: VTQ95449.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1788405-1788852 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 1 788405-1 788852 bp Feature: gene Location: 1789825-1791171 bp Ori: VTQ95455.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1790278-1790752 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 1 790278-1 790752 bp Feature: gene Location: 1791543-1791776 bp Feature: gene Location: 1792302-1792904 bp Feature: gene Location: 4079638-4081359 bp Ori: VTR02129.1 Feature: domain Description: TraI_2 Location: 4079707-4080643 bp Feature: domain Description: TraI_2 Location: 4079707-4080643 bp Feature: domain Description: TraI_2_C Location: 4080982-4081345 bp Feature: domain Description: TraI_2_C Location: 4080982-4081 345 bp Feature: gene Location: 4081932-4082687 bp Feature: gene Location: 4082684-4084168 bp Ori: VTR02135.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 4082984-4083374 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 4082984-4083374 bp Feature: gene Location: 4084979-4085668 bp Ori: VTR02138.1 Feature: domain Description: Mrr_cat Location: 4085096-4085294 bp Feature: domain Description: Mrr_cat Location: 4085096-4085294 bp Feature: gene Location: 4085665-4085922 bp Ori: VTR02141.1 Feature: domain Description: Tra5 Location: 4085674-4085911 bp Feature: domain Description: Tra5 Location: 4085674-408591 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), ACR3 (COG0798), Acetyltransf_7 (pfam13508), Acetyltransf_3 (pfam13302)
RVT-UG8, RVT-UG3, TraI_2 (pfam07514), TraI_2_C (pfam07515), RVT-UG7, Mrr_cat (pfam04471), Tra5 (COG2801)