myRT

myRT report for GCA_902109485.1_39888_D01

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Seq: LR595855.1 Raoultella sp. NCTC 9189 strain NCTC9189 genome assembly, chromosome: 1 (5689207 bp)
Overview 1 RT 1: 1727658-1731878 bp 2 RT 2: 1904269-1908395 bp 3 RT 3: 4599948-4606591 bp Neighborhood of RT #1 [1727658, 1731878] PinE RVT-UG2 Neighborhood of RT #2 [1904269, 1908409] Hypoth_Ymh PHA02517 RVT-GII GIIM InsE Neighborhood of RT #3 [4599948, 4606599] INT_C_like_1 PRK09692 RVT-UG7 Psu Feature: gene Location: 1727658-1727798 bp Feature: gene Location: 1728341-1728919 bp Ori: VUC77602.1 Gene: pinR Feature: domain Description: PinE Location: 1728350-1728905 bp Feature: domain Description: PinE Location: 1 728350-1 728905 bp Feature: gene Location: 1729018-1730304 bp Ori: VUC77606.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1729219-1730011 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 72921 9-1 73001 1 bp Feature: gene Location: 1730367-1730576 bp Feature: gene Location: 1731375-1731878 bp Feature: gene Location: 1904269-1904934 bp Ori: VUC78245.1 Feature: domain Description: Hypoth_Ymh Location: 1904554-1904911 bp Feature: domain Description: Hypoth_Ymh Location: 1 904554-1 90491 1 bp Feature: gene Location: 1904972-1905178 bp Ori: VUC78249.1 Feature: domain Description: PHA02517 Location: 1904975-1905158 bp Feature: domain Description: PHA0251 7 Location: 1 904975-1 9051 58 bp Feature: gene Location: 1905540-1907063 bp Ori: VUC78253.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1905813-1906545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 90581 3-1 906545 bp Feature: domain Description: GIIM Note: maturase Location: 1906644-1906839 bp Feature: domain Description: GIIM Note: maturase Location: 1 906644-1 906839 bp Feature: gene Location: 1907694-1907987 bp Feature: gene Location: 1908107-1908409 bp Ori: VUC78266.1 Feature: domain Description: InsE Location: 1908116-1908395 bp Feature: domain Description: InsE Location: 1 9081 1 6-1 908395 bp Feature: gene Location: 4599948-4601000 bp Ori: VUC88117.1 Feature: domain Description: INT_C_like_1 Location: 4600464-4600938 bp Feature: domain Description: INT_C_like_1 Location: 4600464-4600938 bp Feature: gene Location: 4601483-4602655 bp Ori: VUC88121.1 Gene: intS_3 Feature: domain Description: PRK09692 Location: 4601489-4602641 bp Feature: domain Description: PRK09692 Location: 4601 489-4602641 bp Feature: gene Location: 4602953-4604581 bp Ori: VUC88125.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 4603388-4603790 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 4603388-4603790 bp Feature: gene Location: 4604578-4605318 bp Feature: gene Location: 4606033-4606599 bp Ori: VUC88133.1 Feature: domain Description: Psu Location: 4606051-4606591 bp Feature: domain Description: Psu Location: 4606051 -4606591 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-UG2, Hypoth_Ymh (pfam09509), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963), INT_C_like_1 (cd01184), PRK09692 (Integrase; provisional), RVT-UG7
Psu (pfam07455)