myRT

myRT report for GCA_902141225.1_42912_E01

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Seq: LR595858.1 Streptococcus sp. NCTC 10228 strain NCTC10228 genome assembly, chromosome: 1 (2121218 bp)
Overview 1 RT 1: 645601-655861 bp 2 RT 2: 692640-703155 bp 3 RT 3: 1043398-1049297 bp 4 RT 4: 1445283-1449989 bp Neighborhood of RT #1 [645601, 655861] PHA03411 COG4646 COG4646 Helicase_C RVT_N RVT-GII GIIM Neighborhood of RT #2 [692640, 703166] N6_Mtase COG4646 KOG1000 RVT_N RVT-GII GIIM CcmA Neighborhood of RT #3 [1043398, 1049302] HTH_XRE RGG_Cterm AroE RVT_N RVT-GII GIIM YcjR CofE Neighborhood of RT #4 [1445283, 1449989] RVT_N RVT-GII GIIM Feature: gene Location: 645601-647358 bp Feature: gene Location: 647309-652153 bp Ori: VUC96757.1 Feature: domain Description: PHA03411 Location: 648359-648611 bp Feature: domain Description: PHA0341 1 Location: 648359-64861 1 bp Feature: domain Description: COG4646 Location: 648926-649682 bp Feature: domain Description: COG4646 Location: 648926-649682 bp Feature: domain Description: COG4646 Location: 649949-651659 bp Feature: domain Description: COG4646 Location: 649949-651 659 bp Feature: domain Description: Helicase_C Location: 651848-652067 bp Feature: domain Description: Helicase_C Location: 651 848-652067 bp Feature: gene Location: 652709-653791 bp Ori: VUC96760.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 652754-652997 bp Feature: domain Description: RVT_N Location: 652754-652997 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 653042-653690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 653042-653690 bp Feature: gene Location: 653788-654378 bp Ori: VUC96763.1 Feature: domain Description: GIIM Note: maturase Location: 653794-653974 bp Feature: domain Description: GIIM Note: maturase Location: 653794-653974 bp Feature: gene Location: 654512-655861 bp Feature: gene Location: 692640-693323 bp Feature: gene Location: 693388-699528 bp Ori: VUC96877.1 Feature: domain Description: N6_Mtase Location: 695560-696178 bp Feature: domain Description: N6_Mtase Location: 695560-6961 78 bp Feature: domain Description: COG4646 Location: 696736-699040 bp Feature: domain Description: COG4646 Location: 696736-699040 bp Feature: domain Description: KOG1000 Location: 699292-699511 bp Feature: domain Description: KOG1 000 Location: 699292-69951 1 bp Feature: gene Location: 700088-701746 bp Ori: VUC96880.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 700133-700376 bp Feature: domain Description: RVT_N Location: 7001 33-700376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 700421-701069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 700421 -701 069 bp Feature: domain Description: GIIM Note: maturase Location: 701126-701354 bp Feature: domain Description: GIIM Note: maturase Location: 701 1 26-701 354 bp Feature: gene Location: 701921-702562 bp Feature: gene Location: 702537-703166 bp Ori: VUC96886.1 Gene: lptB_1 Feature: domain Description: CcmA Location: 702543-703155 bp Feature: domain Description: CcmA Location: 702543-7031 55 bp Feature: gene Location: 1043398-1044252 bp Ori: VUC97887.1 Feature: domain Description: HTH_XRE Location: 1043416-1043584 bp Feature: domain Description: HTH_XRE Location: 1 04341 6-1 043584 bp Feature: domain Description: RGG_Cterm Location: 1043590-1044244 bp Feature: domain Description: RGG_Cterm Location: 1 043590-1 044244 bp Feature: gene Location: 1044535-1045401 bp Ori: VUC97890.1 Gene: aroE_2 Feature: domain Description: AroE Location: 1044544-1045339 bp Feature: domain Description: AroE Location: 1 044544-1 045339 bp Feature: gene Location: 1046039-1047697 bp Ori: VUC97893.1 Gene: ltrA_3 Feature: domain Description: RVT_N Location: 1046084-1046327 bp Feature: domain Description: RVT_N Location: 1 046084-1 046327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1046372-1047020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 046372-1 047020 bp Feature: domain Description: GIIM Note: maturase Location: 1047077-1047305 bp Feature: domain Description: GIIM Note: maturase Location: 1 047077-1 047305 bp Feature: gene Location: 1048241-1048522 bp Ori: VUC97896.1 Feature: domain Description: YcjR Location: 1048286-1048496 bp Feature: domain Description: YcjR Location: 1 048286-1 048496 bp Feature: gene Location: 1048568-1049302 bp Ori: VUC97899.1 Feature: domain Description: CofE Location: 1048571-1049297 bp Feature: domain Description: CofE Location: 1 048571 -1 049297 bp Feature: gene Location: 1445283-1445588 bp Feature: gene Location: 1445657-1446475 bp Feature: gene Location: 1446609-1448267 bp Ori: VUC99079.1 Gene: ltrA_4 Feature: domain Description: RVT_N Location: 1446654-1446897 bp Feature: domain Description: RVT_N Location: 1 446654-1 446897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1446942-1447590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 446942-1 447590 bp Feature: domain Description: GIIM Note: maturase Location: 1447647-1447875 bp Feature: domain Description: GIIM Note: maturase Location: 1 447647-1 447875 bp Feature: gene Location: 1448823-1449545 bp Feature: gene Location: 1449600-1449989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA03411 (putative methyltransferase; Provisional), COG4646 (Adenine-specific DNA methylase, N12 class ), Helicase_C (pfam00271), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), N6_Mtase (pfam02384), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), CcmA (COG4133), HTH_XRE (smart00530)
RGG_Cterm (TIGR01716), AroE (COG0169), YcjR (COG1082), CofE (COG1478)