myRT

myRT report for GCA_902143595.2_S32_Final_assembly2

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Seq: LR597066.2 Dyadobacter sp. 32 isolate Dyadobacter sp. 32 sample 2 genome assembly, chromosome: 1 (7101228 bp)
Overview 1 RT 1: 627118-631917 bp 2 RT 2: 2022739-2028349 bp 3 RT 3: 2986672-2993736 bp 4 RT 4: 5178390-5184908 bp Neighborhood of RT #1 [627118, 631931] PA_CoA_Oxy5 RVT-GII GIIM KOG2358 Neighborhood of RT #2 [2022739, 2028354] COG3415 DDE_3 RVT-GII PSCyt1 LRR_RI Fn3_assoc DUF1501 Neighborhood of RT #3 [2986672, 2993736] DDE_Tnp_1 RVT-UG5 nitrilase YbjD YbjD Neighborhood of RT #4 [5178390, 5184908] RVT-UG8 RVT-UG3 Hepar_II_III_N Hepar_II_III Feature: gene Location: 627118-628161 bp Feature: domain Description: PA_CoA_Oxy5 Location: 627145-628150 bp Feature: domain Description: PA_CoA_Oxy5 Location: 6271 45-6281 50 bp Feature: gene Location: 628248-629330 bp Feature: gene Location: 629434-630708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 629629-630244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 629629-630244 bp Feature: domain Description: GIIM Note: maturase Location: 630301-630529 bp Feature: domain Description: GIIM Note: maturase Location: 630301 -630529 bp Feature: gene Location: 630994-631212 bp Feature: gene Location: 631335-631931 bp Feature: domain Description: KOG2358 Location: 631347-631917 bp Feature: domain Description: KOG2358 Location: 631 347-631 91 7 bp Feature: gene Location: 2022739-2023293 bp Feature: domain Description: COG3415 Location: 2022865-2023267 bp Feature: domain Description: COG341 5 Location: 2022865-2023267 bp Feature: gene Location: 2023301-2023813 bp Feature: domain Description: DDE_3 Location: 2023307-2023730 bp Feature: domain Description: DDE_3 Location: 2023307-2023730 bp Feature: gene Location: 2023948-2024253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2023951-2024080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2023951 -2024080 bp Feature: gene Location: 2024712-2026874 bp Feature: domain Description: PSCyt1 Location: 2025327-2025504 bp Feature: domain Description: PSCyt1 Location: 2025327-2025504 bp Feature: domain Description: LRR_RI Location: 2025825-2026110 bp Feature: domain Description: LRR_RI Location: 2025825-20261 1 0 bp Feature: domain Description: Fn3_assoc Location: 2026218-2026377 bp Feature: domain Description: Fn3_assoc Location: 202621 8-2026377 bp Feature: gene Location: 2026894-2028354 bp Feature: domain Description: DUF1501 Location: 2027080-2028349 bp Feature: domain Description: DUF1 501 Location: 2027080-2028349 bp Feature: gene Location: 2986672-2988045 bp Feature: domain Description: DDE_Tnp_1 Location: 2987191-2987737 bp Feature: domain Description: DDE_Tnp_1 Location: 29871 91 -2987737 bp Feature: gene Location: 2988049-2988309 bp Feature: gene Location: 2988413-2991607 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2988953-2989427 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2988953-2989427 bp Feature: domain Description: nitrilase Location: 2990840-2991491 bp Feature: domain Description: nitrilase Location: 2990840-2991 491 bp Feature: gene Location: 2991668-2993560 bp Feature: domain Description: YbjD Location: 2991686-2991878 bp Feature: domain Description: YbjD Location: 2991 686-2991 878 bp Feature: domain Description: YbjD Location: 2992553-2993222 bp Feature: domain Description: YbjD Location: 2992553-2993222 bp Feature: gene Location: 2993602-2993736 bp Feature: gene Location: 5178390-5178629 bp Feature: gene Location: 5178855-5179064 bp Feature: gene Location: 5179292-5181253 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 5179796-5180240 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 51 79796-51 80240 bp Feature: gene Location: 5181250-5182431 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 5181514-5181982 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 51 81 51 4-51 81 982 bp Feature: gene Location: 5182578-5184650 bp Feature: domain Description: Hepar_II_III_N Location: 5182758-5183724 bp Feature: domain Description: Hepar_II_III_N Location: 51 82758-51 83724 bp Feature: domain Description: Hepar_II_III Location: 5183790-5184486 bp Feature: domain Description: Hepar_II_III Location: 51 83790-51 84486 bp Feature: gene Location: 5184756-5184908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PA_CoA_Oxy5 (TIGR02160), RVT-GII, GIIM (pfam08388), KOG2358 (KOG2358, NifU-like domain-containing proteins ), COG3415 (Transposase ), DDE_3 (pfam13358), PSCyt1 (pfam07635), LRR_RI (smart00368), Fn3_assoc (pfam13287), DUF1501 (pfam07394)
DDE_Tnp_1 (pfam01609), RVT-UG5, nitrilase (cl11424), YbjD (COG3593), RVT-UG8, RVT-UG3, Hepar_II_III_N (pfam16889), Hepar_II_III (pfam07940)