myRT

myRT report for GCA_902381805.1_UHGG_MGYG-HGUT-01704

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Seq: LR698970.1 Lachnospiraceae bacterium isolate MGYG-HGUT-01704 genome assembly, chromosome: 1 (3065949 bp)
Overview 1 RT 1: 708794-712069 bp 2 RT 2: 807033-810560 bp 3 RT 3: 1274026-1278057 bp 4 RT 4: 1737164-1744976 bp 5 RT 5: 1902072-1907003 bp 6 RT 6: 1961155-1965549 bp 7 RT 7: 2901858-2907606 bp Neighborhood of RT #1 [708794, 712608] RVT-DGRs Avd_like pfam03781 Neighborhood of RT #2 [807033, 810649] PHA00653 Avd_like RVT-DGRs RVT-DGRs Phage_holin_4_1 Neighborhood of RT #3 [1274026, 1278062] rpsA RVT-GII HNHc Ga5DH-like_SDR_c Neighborhood of RT #4 [1737164, 1744993] CcmA carB RVT-GII GIIM SurA_N_3 Lys_export Neighborhood of RT #5 [1902072, 1907003] GP88 RVT-UG27 Neighborhood of RT #6 [1961155, 1965581] HTH_XRE DNA_ligase_A_N RVT-GII MATE_MepA_like Neighborhood of RT #7 [2901858, 2907626] PRK05402 AcrR RVT-Retrons TatD_DNAse PerM Feature: gene Location: 708794-709174 bp Feature: gene Location: 709281-709481 bp Feature: gene Location: 709522-710835 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 709903-710569 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 709903-71 0569 bp Feature: gene Location: 711095-711439 bp Feature: domain Description: Avd_like Location: 711119-711431 bp Feature: domain Description: Avd_like Location: 71 1 1 1 9-71 1 431 bp Feature: gene Location: 711511-712608 bp Feature: domain Description: pfam03781 Location: 711751-712069 bp Feature: domain Description: pfam03781 Location: 71 1 751 -71 2069 bp Feature: gene Location: 807033-808175 bp Feature: domain Description: PHA00653 Location: 807156-808173 bp Feature: domain Description: PHA00653 Location: 8071 56-8081 73 bp Feature: gene Location: 808216-808572 bp Feature: domain Description: Avd_like Location: 808246-808549 bp Feature: domain Description: Avd_like Location: 808246-808549 bp Feature: gene Location: 808899-809300 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 809139-809295 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8091 39-809295 bp Feature: gene Location: 809442-809960 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 809448-809757 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 809448-809757 bp Feature: gene Location: 809985-810164 bp Feature: gene Location: 810161-810649 bp Feature: domain Description: Phage_holin_4_1 Location: 810200-810560 bp Feature: domain Description: Phage_holin_4_1 Location: 81 0200-81 0560 bp Feature: gene Location: 1274026-1274664 bp Feature: domain Description: rpsA Location: 1274038-1274632 bp Feature: domain Description: rpsA Location: 1 274038-1 274632 bp Feature: gene Location: 1274976-1275131 bp Feature: gene Location: 1275360-1276634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1275726-1276425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 275726-1 276425 bp Feature: gene Location: 1276725-1277279 bp Feature: domain Description: HNHc Note: nucleases Location: 1277016-1277127 bp Feature: domain Description: HNHc Note: nucleases Location: 1 27701 6-1 2771 27 bp Feature: gene Location: 1277385-1278062 bp Feature: domain Description: Ga5DH-like_SDR_c Location: 1277391-1278057 bp Feature: domain Description: Ga5DH-like_SDR_c Location: 1 277391 -1 278057 bp Feature: gene Location: 1737164-1737868 bp Feature: domain Description: CcmA Location: 1737167-1737845 bp Feature: domain Description: CcmA Location: 1 7371 67-1 737845 bp Feature: gene Location: 1738030-1741248 bp Feature: domain Description: carB Location: 1738033-1741234 bp Feature: domain Description: carB Location: 1 738033-1 741 234 bp Feature: gene Location: 1741342-1742754 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1741693-1742314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 741 693-1 74231 4 bp Feature: domain Description: GIIM Note: maturase Location: 1742368-1742593 bp Feature: domain Description: GIIM Note: maturase Location: 1 742368-1 742593 bp Feature: gene Location: 1743227-1744192 bp Feature: domain Description: SurA_N_3 Location: 1743749-1743974 bp Feature: domain Description: SurA_N_3 Location: 1 743749-1 743974 bp Feature: gene Location: 1744391-1744993 bp Feature: domain Description: Lys_export Location: 1744409-1744976 bp Feature: domain Description: Lys_export Location: 1 744409-1 744976 bp Feature: gene Location: 1902072-1902674 bp Feature: domain Description: GP88 Location: 1902162-1902486 bp Feature: domain Description: GP88 Location: 1 9021 62-1 902486 bp Feature: gene Location: 1902674-1904029 bp Feature: gene Location: 1904034-1905314 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1904226-1904874 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 1 904226-1 904874 bp Feature: gene Location: 1905629-1906474 bp Feature: gene Location: 1906521-1907003 bp Feature: gene Location: 1961155-1961460 bp Feature: gene Location: 1961513-1962319 bp Feature: domain Description: HTH_XRE Location: 1961540-1961711 bp Feature: domain Description: HTH_XRE Location: 1 961 540-1 961 71 1 bp Feature: domain Description: DNA_ligase_A_N Location: 1962044-1962290 bp Feature: domain Description: DNA_ligase_A_N Location: 1 962044-1 962290 bp Feature: gene Location: 1962494-1963789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1962749-1963439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 962749-1 963439 bp Feature: gene Location: 1963842-1964087 bp Feature: gene Location: 1964280-1965581 bp Feature: domain Description: MATE_MepA_like Location: 1964292-1965549 bp Feature: domain Description: MATE_MepA_like Location: 1 964292-1 965549 bp Feature: gene Location: 2901858-2903762 bp Feature: domain Description: PRK05402 Location: 2901876-2903757 bp Feature: domain Description: PRK05402 Location: 2901 876-2903757 bp Feature: gene Location: 2903778-2904410 bp Feature: domain Description: AcrR Location: 2903814-2904231 bp Feature: domain Description: AcrR Location: 290381 4-2904231 bp Feature: gene Location: 2904681-2905649 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2904843-2905401 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2904843-2905401 bp Feature: gene Location: 2905733-2906497 bp Feature: domain Description: TatD_DNAse Location: 2905739-2906492 bp Feature: domain Description: TatD_DNAse Location: 2905739-2906492 bp Feature: gene Location: 2906487-2907626 bp Feature: domain Description: PerM Location: 2906553-2907606 bp Feature: domain Description: PerM Location: 2906553-2907606 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), PHA00653 (mtd;major tropism determinant), Phage_holin_4_1 (pfam05105), rpsA (TIGR00717), RVT-GII, HNHc (smart00507), Ga5DH-like_SDR_c (cd05347), CcmA (COG4133)
carB (PRK12815), GIIM (pfam08388), SurA_N_3 (pfam13624), Lys_export (pfam03956), GP88 (pfam17338), RVT-UG27, HTH_XRE (smart00530), DNA_ligase_A_N (pfam04675), MATE_MepA_like (cd13143), PRK05402 (1,4-alpha-glucan branching protein GlgB)
AcrR (COG1309), RVT-Retrons, TatD_DNAse (cd01310), PerM (COG0628)