myRT

myRT report for GCA_902387715.1_UHGG_MGYG-HGUT-02492

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Seq: LR699005.1 Lachnospiraceae bacterium isolate MGYG-HGUT-02492 genome assembly, chromosome: 1 (3449685 bp)
Overview 1 RT 1: 729431-733876 bp 2 RT 2: 1468750-1471606 bp 3 RT 3: 1492595-1497959 bp 4 RT 4: 1948287-1952354 bp 5 RT 5: 2049791-2054435 bp 6 RT 6: 2182341-2186739 bp 7 RT 7: 2324292-2329420 bp 8 RT 8: 2402445-2416068 bp 9 RT 9: 2511475-2516342 bp 10 RT 10: 2550261-2557854 bp 11 RT 11: 2564875-2569323 bp 12 RT 12: 2727784-2733421 bp 13 RT 13: 3208822-3213236 bp 14 RT 14: 3235511-3239277 bp Neighborhood of RT #1 [729431, 733884] Maff2 VirD4 RVT_N RVT-GII GIIM VirD4 Neighborhood of RT #2 [1468750, 1471608] RVT-GII GIIM FeoA Neighborhood of RT #3 [1492595, 1497961] DUF2225 RVT-GII GIIM PRK00509 argC Neighborhood of RT #4 [1948287, 1952354] RVT-DGRs Neighborhood of RT #5 [2049791, 2054449] SLC6sbd_Tyt1-Like RVT-GII GIIM fadh2 Neighborhood of RT #6 [2182341, 2186744] OmpR RVT-GII GIIM MdlB Neighborhood of RT #7 [2324292, 2329467] COG4189 RVT-GII GIIM TktA2 TPP_TK Neighborhood of RT #8 [2402445, 2416088] TMP_TenI ThiM RVT-GII GIIM DapB PRK03170 PRK05813 TypA RVT-GII GIIM PRK07590 ANTAR Neighborhood of RT #9 [2511475, 2516344] Acyl_transf_3 RVT-GII GIIM COG5263 CW_binding_1 CW_binding_1 CW_binding_1 CW_binding_1 ErfK Neighborhood of RT #10 [2550261, 2557874] spore_0_A HATPase_AgrC-ComD-like RVT-UG5 nitrilase XerD ddl Neighborhood of RT #11 [2564875, 2569328] VirD4 RVT_N RVT-GII GIIM VirD4 Maff2 Neighborhood of RT #12 [2727784, 2733426] mycofact_OYE_2 RVT-GII GIIM PRK12548 Neighborhood of RT #13 [3208822, 3213463] CsrA RVT-GII GIIM INT_C_like_3 YhcG Neighborhood of RT #14 [3235511, 3239277] HIRAN RVT-GII GIIM Feature: gene Location: 729431-729589 bp Feature: domain Description: Maff2 Location: 729434-729584 bp Feature: domain Description: Maff2 Location: 729434-729584 bp Feature: gene Location: 729679-730848 bp Feature: domain Description: VirD4 Location: 729691-730681 bp Feature: domain Description: VirD4 Location: 729691 -730681 bp Feature: gene Location: 730983-732647 bp Feature: domain Description: RVT_N Location: 731028-731271 bp Feature: domain Description: RVT_N Location: 731 028-731 271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 731316-731967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 731 31 6-731 967 bp Feature: domain Description: GIIM Note: maturase Location: 732018-732252 bp Feature: domain Description: GIIM Note: maturase Location: 73201 8-732252 bp Feature: gene Location: 732922-733194 bp Feature: gene Location: 733231-733884 bp Feature: domain Description: VirD4 Location: 733453-733876 bp Feature: domain Description: VirD4 Location: 733453-733876 bp Feature: gene Location: 1468750-1469046 bp Feature: gene Location: 1469048-1469290 bp Feature: gene Location: 1469398-1470792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1469716-1470340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 46971 6-1 470340 bp Feature: domain Description: GIIM Note: maturase Location: 1470397-1470619 bp Feature: domain Description: GIIM Note: maturase Location: 1 470397-1 47061 9 bp Feature: gene Location: 1471108-1471263 bp Feature: gene Location: 1471396-1471608 bp Feature: domain Description: FeoA Location: 1471402-1471606 bp Feature: domain Description: FeoA Location: 1 471 402-1 471 606 bp Feature: gene Location: 1492595-1493452 bp Feature: domain Description: DUF2225 Location: 1492739-1493426 bp Feature: domain Description: DUF2225 Location: 1 492739-1 493426 bp Feature: gene Location: 1493571-1493813 bp Feature: gene Location: 1493921-1495315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1494239-1494863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 494239-1 494863 bp Feature: domain Description: GIIM Note: maturase Location: 1494920-1495130 bp Feature: domain Description: GIIM Note: maturase Location: 1 494920-1 4951 30 bp Feature: gene Location: 1495403-1496629 bp Feature: domain Description: PRK00509 Location: 1495409-1496597 bp Feature: domain Description: PRK00509 Location: 1 495409-1 496597 bp Feature: gene Location: 1496789-1497961 bp Feature: domain Description: argC Location: 1496906-1497959 bp Feature: domain Description: argC Location: 1 496906-1 497959 bp Feature: gene Location: 1948287-1948577 bp Feature: gene Location: 1948693-1949061 bp Feature: gene Location: 1949018-1950274 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1949312-1949903 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 94931 2-1 949903 bp Feature: gene Location: 1950405-1950578 bp Feature: gene Location: 1950660-1952354 bp Feature: gene Location: 2049791-2051188 bp Feature: domain Description: SLC6sbd_Tyt1-Like Location: 2049815-2051168 bp Feature: domain Description: SLC6sbd_Tyt1 -Like Location: 204981 5-2051 1 68 bp Feature: gene Location: 2051283-2051474 bp Feature: gene Location: 2051548-2052942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2051866-2052490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2051 866-2052490 bp Feature: domain Description: GIIM Note: maturase Location: 2052547-2052769 bp Feature: domain Description: GIIM Note: maturase Location: 2052547-2052769 bp Feature: gene Location: 2053249-2053467 bp Feature: gene Location: 2053583-2054449 bp Feature: domain Description: fadh2 Location: 2053625-2054435 bp Feature: domain Description: fadh2 Location: 2053625-2054435 bp Feature: gene Location: 2182341-2182571 bp Feature: domain Description: OmpR Location: 2182362-2182554 bp Feature: domain Description: OmpR Location: 21 82362-21 82554 bp Feature: gene Location: 2182693-2182875 bp Feature: gene Location: 2182949-2184343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2183267-2183891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 83267-21 83891 bp Feature: domain Description: GIIM Note: maturase Location: 2183948-2184170 bp Feature: domain Description: GIIM Note: maturase Location: 21 83948-21 841 70 bp Feature: gene Location: 2184453-2184761 bp Feature: gene Location: 2184990-2186744 bp Feature: domain Description: MdlB Location: 2185029-2186739 bp Feature: domain Description: MdlB Location: 21 85029-21 86739 bp Feature: gene Location: 2324292-2325227 bp Feature: domain Description: COG4189 Location: 2324319-2325195 bp Feature: domain Description: COG41 89 Location: 232431 9-23251 95 bp Feature: gene Location: 2325284-2325526 bp Feature: gene Location: 2325762-2327156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2326080-2326704 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2326080-2326704 bp Feature: domain Description: GIIM Note: maturase Location: 2326761-2326971 bp Feature: domain Description: GIIM Note: maturase Location: 2326761 -2326971 bp Feature: gene Location: 2327702-2328640 bp Feature: domain Description: TktA2 Location: 2327717-2328635 bp Feature: domain Description: TktA2 Location: 232771 7-2328635 bp Feature: gene Location: 2328628-2329467 bp Feature: domain Description: TPP_TK Location: 2328661-2329420 bp Feature: domain Description: TPP_TK Location: 2328661 -2329420 bp Feature: gene Location: 2402445-2403095 bp Feature: domain Description: TMP_TenI Location: 2402469-2403072 bp Feature: domain Description: TMP_TenI Location: 2402469-2403072 bp Feature: gene Location: 2403179-2404054 bp Feature: domain Description: ThiM Location: 2403206-2404028 bp Feature: domain Description: ThiM Location: 2403206-2404028 bp Feature: gene Location: 2404684-2406078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2405002-2405626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2405002-2405626 bp Feature: domain Description: GIIM Note: maturase Location: 2405683-2405905 bp Feature: domain Description: GIIM Note: maturase Location: 2405683-2405905 bp Feature: gene Location: 2406731-2407492 bp Feature: domain Description: DapB Location: 2406734-2407481 bp Feature: domain Description: DapB Location: 2406734-2407481 bp Feature: gene Location: 2407517-2408407 bp Feature: domain Description: PRK03170 Location: 2407529-2408396 bp Feature: domain Description: PRK031 70 Location: 2407529-2408396 bp Feature: gene Location: 2409466-2410086 bp Feature: domain Description: PRK05813 Location: 2409469-2410081 bp Feature: domain Description: PRK0581 3 Location: 2409469-241 0081 bp Feature: gene Location: 2410297-2412129 bp Feature: domain Description: TypA Location: 2410315-2412112 bp Feature: domain Description: TypA Location: 241 031 5-241 21 1 2 bp Feature: gene Location: 2412270-2413664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2412588-2413212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 2588-241 321 2 bp Feature: domain Description: GIIM Note: maturase Location: 2413269-2413479 bp Feature: domain Description: GIIM Note: maturase Location: 241 3269-241 3479 bp Feature: gene Location: 2414168-2415382 bp Feature: domain Description: PRK07590 Location: 2414171-2415377 bp Feature: domain Description: PRK07590 Location: 241 41 71 -241 5377 bp Feature: gene Location: 2415537-2416088 bp Feature: domain Description: ANTAR Location: 2415930-2416068 bp Feature: domain Description: ANTAR Location: 241 5930-241 6068 bp Feature: gene Location: 2511475-2511690 bp Feature: gene Location: 2511984-2513024 bp Feature: domain Description: Acyl_transf_3 Location: 2512011-2512923 bp Feature: domain Description: Acyl_transf_3 Location: 251 201 1 -251 2923 bp Feature: gene Location: 2513131-2514525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2513449-2514073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251 3449-251 4073 bp Feature: domain Description: GIIM Note: maturase Location: 2514130-2514352 bp Feature: domain Description: GIIM Note: maturase Location: 251 41 30-251 4352 bp Feature: gene Location: 2514635-2514943 bp Feature: gene Location: 2515022-2516344 bp Feature: domain Description: COG5263 Location: 2515148-2515601 bp Feature: domain Description: COG5263 Location: 251 51 48-251 5601 bp Feature: domain Description: CW_binding_1 Location: 2515610-2515661 bp Feature: domain Description: CW_binding_1 Location: 251 561 0-251 5661 bp Feature: domain Description: CW_binding_1 Location: 2515667-2515727 bp Feature: domain Description: CW_binding_1 Location: 251 5667-251 5727 bp Feature: domain Description: CW_binding_1 Location: 2515736-2515772 bp Feature: domain Description: CW_binding_1 Location: 251 5736-251 5772 bp Feature: domain Description: CW_binding_1 Location: 2515799-2515835 bp Feature: domain Description: CW_binding_1 Location: 251 5799-251 5835 bp Feature: domain Description: ErfK Location: 2515976-2516342 bp Feature: domain Description: ErfK Location: 251 5976-251 6342 bp Feature: gene Location: 2550261-2551049 bp Feature: domain Description: spore_0_A Location: 2550282-2551041 bp Feature: domain Description: spore_0_A Location: 2550282-2551 041 bp Feature: gene Location: 2551206-2552705 bp Feature: domain Description: HATPase_AgrC-ComD-like Location: 2552151-2552550 bp Feature: domain Description: HATPase_AgrC-ComD-like Location: 25521 51 -2552550 bp Feature: gene Location: 2552723-2555734 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2553239-2553710 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2553239-255371 0 bp Feature: domain Description: nitrilase Location: 2554979-2555660 bp Feature: domain Description: nitrilase Location: 2554979-2555660 bp Feature: gene Location: 2555841-2556761 bp Feature: domain Description: XerD Location: 2555850-2556744 bp Feature: domain Description: XerD Location: 2555850-2556744 bp Feature: gene Location: 2556876-2557874 bp Feature: domain Description: ddl Location: 2556984-2557854 bp Feature: domain Description: ddl Location: 2556984-2557854 bp Feature: gene Location: 2564875-2565528 bp Feature: domain Description: VirD4 Location: 2565097-2565520 bp Feature: domain Description: VirD4 Location: 2565097-2565520 bp Feature: gene Location: 2565719-2565874 bp Feature: gene Location: 2566112-2567776 bp Feature: domain Description: RVT_N Location: 2566157-2566400 bp Feature: domain Description: RVT_N Location: 25661 57-2566400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2566445-2567096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2566445-2567096 bp Feature: domain Description: GIIM Note: maturase Location: 2567147-2567381 bp Feature: domain Description: GIIM Note: maturase Location: 25671 47-2567381 bp Feature: gene Location: 2567911-2569080 bp Feature: domain Description: VirD4 Location: 2567923-2568913 bp Feature: domain Description: VirD4 Location: 2567923-256891 3 bp Feature: gene Location: 2569170-2569328 bp Feature: domain Description: Maff2 Location: 2569173-2569323 bp Feature: domain Description: Maff2 Location: 25691 73-2569323 bp Feature: gene Location: 2727784-2727936 bp Feature: gene Location: 2728518-2730518 bp Feature: domain Description: mycofact_OYE_2 Location: 2728539-2730486 bp Feature: domain Description: mycofact_OYE_2 Location: 2728539-2730486 bp Feature: gene Location: 2730619-2732013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2730937-2731561 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2730937-2731 561 bp Feature: domain Description: GIIM Note: maturase Location: 2731618-2731840 bp Feature: domain Description: GIIM Note: maturase Location: 2731 61 8-2731 840 bp Feature: gene Location: 2732123-2732431 bp Feature: gene Location: 2732557-2733426 bp Feature: domain Description: PRK12548 Location: 2732560-2733421 bp Feature: domain Description: PRK1 2548 Location: 2732560-2733421 bp Feature: gene Location: 3208822-3208950 bp Feature: gene Location: 3208969-3209238 bp Feature: domain Description: CsrA Location: 3208972-3209104 bp Feature: domain Description: CsrA Location: 3208972-32091 04 bp Feature: gene Location: 3209613-3211007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3209931-3210555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3209931 -321 0555 bp Feature: domain Description: GIIM Note: maturase Location: 3210612-3210822 bp Feature: domain Description: GIIM Note: maturase Location: 321 061 2-321 0822 bp Feature: gene Location: 3211599-3212177 bp Feature: domain Description: INT_C_like_3 Location: 3211611-3212151 bp Feature: domain Description: INT_C_like_3 Location: 321 1 61 1 -321 21 51 bp Feature: gene Location: 3212357-3213463 bp Feature: domain Description: YhcG Location: 3212756-3213236 bp Feature: domain Description: YhcG Location: 321 2756-321 3236 bp Feature: gene Location: 3235511-3235876 bp Feature: domain Description: HIRAN Location: 3235520-3235679 bp Feature: domain Description: HIRAN Location: 3235520-3235679 bp Feature: gene Location: 3235898-3236515 bp Feature: gene Location: 3236841-3238235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3237159-3237783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32371 59-3237783 bp Feature: domain Description: GIIM Note: maturase Location: 3237840-3238062 bp Feature: domain Description: GIIM Note: maturase Location: 3237840-3238062 bp Feature: gene Location: 3238345-3238653 bp Feature: gene Location: 3239053-3239277 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Maff2 (pfam12750), VirD4 (COG3505), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), FeoA (smart00899), DUF2225 (pfam09986), PRK00509 (argininosuccinate synthase; Provisional), argC (TIGR01850), RVT-DGRs
SLC6sbd_Tyt1-Like (cd10336), fadh2 (TIGR00676), OmpR (COG0745), MdlB (COG1132), COG4189 (Predicted transcriptional regulator ), TktA2 (COG3958), TPP_TK (cd02012), TMP_TenI (cd00564), ThiM (COG2145), DapB (COG0289)
PRK03170 (dihydrodipicolinate synthase; Provisional), PRK05813 (single-stranded DNA-binding protein; Provisional), TypA (COG1217), PRK07590 (L,L-diaminopimelate aminotransferase; Validated), ANTAR (smart01012), Acyl_transf_3 (pfam01757), COG5263 (Glucan-binding domain (YG repeat) ), CW_binding_1 (pfam01473), ErfK (COG1376), spore_0_A (TIGR02875)
HATPase_AgrC-ComD-like (cd16935), RVT-UG5, nitrilase (cl11424), XerD (COG4974), ddl (PRK01966), mycofact_OYE_2 (TIGR03997), PRK12548 (shikimate dehydrogenase), CsrA (pfam02599), INT_C_like_3 (cd01192), YhcG (COG4804)
HIRAN (smart00910)