myRT

myRT report for GCA_902702765.1_GD-0088

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Seq: LR738723.1 Streptococcus suis isolate GD-0088 genome assembly, chromosome: 1 (2292626 bp)
Overview 1 RT 1: 331965-338793 bp 2 RT 2: 509811-517544 bp 3 RT 3: 531720-544191 bp 4 RT 4: 581559-587745 bp 5 RT 5: 597192-608332 bp 6 RT 6: 1041435-1049173 bp 7 RT 7: 1056569-1068835 bp Neighborhood of RT #1 [331965, 338801] PRK02363 pyrG RVT-GII Intron_maturas2 HNHc PRK07315 rpmB Neighborhood of RT #2 [509811, 517582] PrgI TraC-F-type RVT_N RVT-GII GIIM TraC-F-type Peptidase_M23 Phage_lysozyme2 PRK08581 Neighborhood of RT #3 [531720, 544191] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc SF2_C_SNF RVT-GII Intron_maturas2 KOG1000 Neighborhood of RT #4 [581559, 587745] Sortase_B TraC-F-type RVT_N RVT-GII GIIM VirB4_CagE AAA_10 Neighborhood of RT #5 [597192, 608332] HELICc RVT-GII Intron_maturas2 HNHc YtxK COG4646 Neighborhood of RT #6 [1041435, 1049211] PrgI RVT_N RVT-GII GIIM TraC-F-type PRK06149 Phage_lysozyme2 PRK08581 Neighborhood of RT #7 [1056569, 1068835] N6_Mtase COG4646 RVT-GII Intron_maturas2 HNHc SF2_C_SNF RVT-GII Intron_maturas2 KOG1000 Feature: gene Location: 331965-332546 bp Feature: domain Description: PRK02363 Location: 332001-332532 bp Feature: domain Description: PRK02363 Location: 332001 -332532 bp Feature: gene Location: 332739-334343 bp Feature: domain Description: pyrG Location: 332742-334338 bp Feature: domain Description: pyrG Location: 332742-334338 bp Feature: gene Location: 334660-336363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334921-335713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334921 -33571 3 bp Feature: domain Description: Intron_maturas2 Location: 335818-336049 bp Feature: domain Description: Intron_maturas2 Location: 33581 8-336049 bp Feature: domain Description: HNHc Note: nucleases Location: 336214-336337 bp Feature: domain Description: HNHc Note: nucleases Location: 33621 4-336337 bp Feature: gene Location: 337339-338220 bp Feature: domain Description: PRK07315 Location: 337342-338218 bp Feature: domain Description: PRK0731 5 Location: 337342-33821 8 bp Feature: gene Location: 338613-338801 bp Feature: domain Description: rpmB Location: 338616-338793 bp Feature: domain Description: rpmB Location: 33861 6-338793 bp Feature: gene Location: 509811-510164 bp Feature: domain Description: PrgI Location: 509823-510081 bp Feature: domain Description: PrgI Location: 509823-51 0081 bp Feature: gene Location: 510121-511605 bp Feature: domain Description: TraC-F-type Location: 510481-511294 bp Feature: domain Description: TraC-F-type Location: 51 0481 -51 1 294 bp Feature: gene Location: 512102-513808 bp Feature: domain Description: RVT_N Location: 512207-512447 bp Feature: domain Description: RVT_N Location: 51 2207-51 2447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 512495-513155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 2495-51 31 55 bp Feature: domain Description: GIIM Note: maturase Location: 513224-513443 bp Feature: domain Description: GIIM Note: maturase Location: 51 3224-51 3443 bp Feature: gene Location: 513741-514781 bp Feature: domain Description: TraC-F-type Location: 513906-514602 bp Feature: domain Description: TraC-F-type Location: 51 3906-51 4602 bp Feature: gene Location: 514778-517582 bp Feature: domain Description: Peptidase_M23 Location: 516224-516428 bp Feature: domain Description: Peptidase_M23 Location: 51 6224-51 6428 bp Feature: domain Description: Phage_lysozyme2 Location: 516581-517091 bp Feature: domain Description: Phage_lysozyme2 Location: 51 6581 -51 7091 bp Feature: domain Description: PRK08581 Location: 517208-517544 bp Feature: domain Description: PRK08581 Location: 51 7208-51 7544 bp Feature: gene Location: 531720-532049 bp Feature: gene Location: 532100-537559 bp Feature: domain Description: N6_Mtase Location: 534107-534698 bp Feature: domain Description: N6_Mtase Location: 5341 07-534698 bp Feature: domain Description: COG4646 Location: 535289-537401 bp Feature: domain Description: COG4646 Location: 535289-537401 bp Feature: gene Location: 538057-539835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 538318-539110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53831 8-5391 1 0 bp Feature: domain Description: Intron_maturas2 Location: 539215-539446 bp Feature: domain Description: Intron_maturas2 Location: 53921 5-539446 bp Feature: domain Description: HNHc Note: nucleases Location: 539611-539797 bp Feature: domain Description: HNHc Note: nucleases Location: 53961 1 -539797 bp Feature: gene Location: 539973-540395 bp Feature: domain Description: SF2_C_SNF Location: 540216-540363 bp Feature: domain Description: SF2_C_SNF Location: 54021 6-540363 bp Feature: gene Location: 540519-540719 bp Feature: gene Location: 540959-542770 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541223-542045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 541 223-542045 bp Feature: domain Description: Intron_maturas2 Location: 542114-542591 bp Feature: domain Description: Intron_maturas2 Location: 5421 1 4-542591 bp Feature: gene Location: 542803-543822 bp Feature: domain Description: KOG1000 Location: 542878-543073 bp Feature: domain Description: KOG1 000 Location: 542878-543073 bp Feature: gene Location: 543892-544191 bp Feature: gene Location: 581559-582329 bp Feature: domain Description: Sortase_B Location: 581787-582318 bp Feature: domain Description: Sortase_B Location: 581 787-58231 8 bp Feature: gene Location: 582367-583425 bp Feature: domain Description: TraC-F-type Location: 582523-583321 bp Feature: domain Description: TraC-F-type Location: 582523-583321 bp Feature: gene Location: 583358-585064 bp Feature: domain Description: RVT_N Location: 583463-583703 bp Feature: domain Description: RVT_N Location: 583463-583703 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 583751-584411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 583751 -58441 1 bp Feature: domain Description: GIIM Note: maturase Location: 584480-584699 bp Feature: domain Description: GIIM Note: maturase Location: 584480-584699 bp Feature: gene Location: 585561-587012 bp Feature: domain Description: VirB4_CagE Location: 585627-586803 bp Feature: domain Description: VirB4_CagE Location: 585627-586803 bp Feature: domain Description: AAA_10 Location: 586857-586998 bp Feature: domain Description: AAA_1 0 Location: 586857-586998 bp Feature: gene Location: 587089-587745 bp Feature: gene Location: 597192-597584 bp Feature: gene Location: 597574-598914 bp Feature: domain Description: HELICc Location: 597649-598018 bp Feature: domain Description: HELICc Location: 597649-59801 8 bp Feature: gene Location: 599115-600818 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 599376-600168 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 599376-6001 68 bp Feature: domain Description: Intron_maturas2 Location: 600273-600504 bp Feature: domain Description: Intron_maturas2 Location: 600273-600504 bp Feature: domain Description: HNHc Note: nucleases Location: 600669-600792 bp Feature: domain Description: HNHc Note: nucleases Location: 600669-600792 bp Feature: gene Location: 601316-607633 bp Feature: domain Description: YtxK Location: 604646-605027 bp Feature: domain Description: YtxK Location: 604646-605027 bp Feature: domain Description: COG4646 Location: 605093-607478 bp Feature: domain Description: COG4646 Location: 605093-607478 bp Feature: gene Location: 607649-608332 bp Feature: gene Location: 1041435-1041788 bp Feature: domain Description: PrgI Location: 1041447-1041720 bp Feature: domain Description: PrgI Location: 1 041 447-1 041 720 bp Feature: gene Location: 1041745-1043238 bp Feature: gene Location: 1043735-1045441 bp Feature: domain Description: RVT_N Location: 1043840-1044080 bp Feature: domain Description: RVT_N Location: 1 043840-1 044080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1044128-1044788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0441 28-1 044788 bp Feature: domain Description: GIIM Note: maturase Location: 1044857-1045076 bp Feature: domain Description: GIIM Note: maturase Location: 1 044857-1 045076 bp Feature: gene Location: 1045374-1046408 bp Feature: domain Description: TraC-F-type Location: 1045539-1046235 bp Feature: domain Description: TraC-F-type Location: 1 045539-1 046235 bp Feature: gene Location: 1046410-1049211 bp Feature: domain Description: PRK06149 Location: 1047835-1048096 bp Feature: domain Description: PRK061 49 Location: 1 047835-1 048096 bp Feature: domain Description: Phage_lysozyme2 Location: 1048207-1048720 bp Feature: domain Description: Phage_lysozyme2 Location: 1 048207-1 048720 bp Feature: domain Description: PRK08581 Location: 1048837-1049173 bp Feature: domain Description: PRK08581 Location: 1 048837-1 0491 73 bp Feature: gene Location: 1056569-1057120 bp Feature: gene Location: 1057169-1062202 bp Feature: domain Description: N6_Mtase Location: 1059182-1059773 bp Feature: domain Description: N6_Mtase Location: 1 0591 82-1 059773 bp Feature: domain Description: COG4646 Location: 1060274-1062059 bp Feature: domain Description: COG4646 Location: 1 060274-1 062059 bp Feature: gene Location: 1062700-1064478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1062961-1063753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 062961 -1 063753 bp Feature: domain Description: Intron_maturas2 Location: 1063858-1064089 bp Feature: domain Description: Intron_maturas2 Location: 1 063858-1 064089 bp Feature: domain Description: HNHc Note: nucleases Location: 1064254-1064440 bp Feature: domain Description: HNHc Note: nucleases Location: 1 064254-1 064440 bp Feature: gene Location: 1064616-1065038 bp Feature: domain Description: SF2_C_SNF Location: 1064859-1065006 bp Feature: domain Description: SF2_C_SNF Location: 1 064859-1 065006 bp Feature: gene Location: 1065162-1065362 bp Feature: gene Location: 1065602-1067413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1065866-1066688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 065866-1 066688 bp Feature: domain Description: Intron_maturas2 Location: 1066757-1067234 bp Feature: domain Description: Intron_maturas2 Location: 1 066757-1 067234 bp Feature: gene Location: 1067446-1068465 bp Feature: domain Description: KOG1000 Location: 1067521-1067716 bp Feature: domain Description: KOG1 000 Location: 1 067521 -1 06771 6 bp Feature: gene Location: 1068536-1068835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK02363 (DNA-directed RNA polymerase subunit delta; Reviewed), pyrG (PRK05380), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK07315 (fructose-bisphosphate aldolase; Provisional), rpmB (PRK00359), PrgI (pfam12666), TraC-F-type (TIGR02746), RVT_N (pfam13655)
GIIM (pfam08388), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), PRK08581 (amidase domain-containing protein), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), SF2_C_SNF (cd18793), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), Sortase_B (cd05826), VirB4_CagE (TIGR00929)
AAA_10 (pfam12846), HELICc (smart00490), YtxK (COG0827), PRK06149 (aminotransferase)