myRT

myRT report for GCA_902705295.1_Combinated_assembly_ONT-Illumina

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Seq: LR740777.1 Escherichia coli strain BEN2908 genome assembly, plasmid: pAPEC2908 (152011 bp)
Overview 1 RT 1: 14341-17489 bp 2 RT 2: 148181-151156 bp Neighborhood of RT #1 [14341, 17489] PHA02517 RVT-GII GIIM RVT-GII Neighborhood of RT #2 [148181, 151156] PHA02517 RVT-GII RVT-GII Feature: gene Location: 14341-14478 bp Feature: gene Location: 14524-14697 bp Ori: CAA0167543.1 Feature: domain Description: PHA02517 Location: 14548-14686 bp Feature: domain Description: PHA0251 7 Location: 1 4548-1 4686 bp Feature: gene Location: 14948-15781 bp Ori: CAA0167578.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14954-15263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 4954-1 5263 bp Feature: domain Description: GIIM Note: maturase Location: 15338-15557 bp Feature: domain Description: GIIM Note: maturase Location: 1 5338-1 5557 bp Feature: gene Location: 15775-16296 bp Ori: CAA0167600.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15871-16222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5871 -1 6222 bp Feature: gene Location: 17060-17227 bp Feature: gene Location: 17244-17489 bp Feature: gene Location: 148181-148378 bp Ori: CAA0172660.1 Feature: domain Description: PHA02517 Location: 148205-148343 bp Feature: domain Description: PHA0251 7 Location: 1 48205-1 48343 bp Feature: gene Location: 148627-148974 bp Feature: gene Location: 148857-149459 bp Ori: CAA0172774.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 148863-149172 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 48863-1 491 72 bp Feature: gene Location: 149505-149774 bp Ori: CAA0172807.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149520-149757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 49520-1 49757 bp Feature: gene Location: 150911-151156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LR740776.1 Escherichia coli strain BEN2908 genome assembly, chromosome: APEC2908 (5061728 bp)
Overview 1 RT 1: 2078267-2082396 bp 2 RT 2: 4673455-4677915 bp Neighborhood of RT #1 [2078267, 2082398] InsE PHA02517 RVT-GII RVT-GII GIIM PHA02517 PRK09413 Neighborhood of RT #2 [4673455, 4677935] InsE PHA02517 RVT-GII RVT-GII GIIM PHA02517 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 Feature: gene Location: 2078267-2078593 bp Ori: CAA0091244.1 Feature: domain Description: InsE Location: 2078270-2078591 bp Feature: domain Description: InsE Location: 2 0782 70-2 078591 bp Feature: gene Location: 2078593-2079072 bp Ori: CAA0091251.1 Feature: domain Description: PHA02517 Location: 2078653-2079007 bp Feature: domain Description: PHA02 517 Location: 2 078653-2 079007 bp Feature: gene Location: 2079837-2080301 bp Ori: CAA0091255.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2079933-2080287 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 079933-2 0802 87 bp Feature: gene Location: 2080276-2081181 bp Ori: CAA0091263.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2080297-2080663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0802 97-2 080663 bp Feature: domain Description: GIIM Note: maturase Location: 2080738-2080936 bp Feature: domain Description: GIIM Note: maturase Location: 2 080738-2 080936 bp Feature: gene Location: 2081373-2081744 bp Ori: CAA0091272.1 Feature: domain Description: PHA02517 Location: 2081376-2081742 bp Feature: domain Description: PHA02 517 Location: 2 081376-2 081742 bp Feature: gene Location: 2082033-2082398 bp Ori: CAA0091279.1 Gene: insC Feature: domain Description: PRK09413 Location: 2082036-2082396 bp Feature: domain Description: PRK09413 Location: 2 082 036-2 082 396 bp Feature: gene Location: 4673455-4673781 bp Ori: CAA0109704.1 Feature: domain Description: InsE Location: 4673458-4673779 bp Feature: domain Description: InsE Location: 4673458-4673779 bp Feature: gene Location: 4674020-4674259 bp Ori: CAA0109711.1 Feature: domain Description: PHA02517 Location: 4674023-4674194 bp Feature: domain Description: PHA02 517 Location: 467402 3-4674194 bp Feature: gene Location: 4675024-4675542 bp Ori: CAA0109720.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4675120-4675474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 467512 0-4675474 bp Feature: gene Location: 4675536-4676369 bp Ori: CAA0109727.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4675542-4675851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4675542 -4675851 bp Feature: domain Description: GIIM Note: maturase Location: 4675926-4676145 bp Feature: domain Description: GIIM Note: maturase Location: 467592 6-4676145 bp Feature: gene Location: 4676498-4676938 bp Ori: CAA0109729.1 Feature: domain Description: PHA02517 Location: 4676501-4676909 bp Feature: domain Description: PHA02 517 Location: 4676501-4676909 bp Feature: gene Location: 4676931-4677935 bp Ori: CAA0109738.1 Feature: domain Description: LZ_Tnp_IS66 Location: 4677069-4677294 bp Feature: domain Description: LZ_Tnp_IS66 Location: 4677069-46772 94 bp Feature: domain Description: zf-IS66 Location: 4677315-4677447 bp Feature: domain Description: zf-IS66 Location: 4677315-4677447 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4677492-4677915 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4677492 -4677915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), PRK09413 (IS2 repressor TnpA; Reviewed), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)