myRT

myRT report for GCA_902810315.1_SC434

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Seq: LR778142.1 Escherichia coli isolate SC434 genome assembly, chromosome: omosome1 (4658197 bp)
Overview 1 RT 1: 1422831-1428436 bp 2 RT 2: 2874121-2882294 bp Neighborhood of RT #1 [1422831, 1428444] DUF5405 Phage_GPA RVT-AbiP2 Q Neighborhood of RT #2 [2874121, 2882314] FocA PRK09692 RVT-Retrons COG4643 COG5519 Feature: gene Location: 1422831-1423106 bp Feature: domain Description: DUF5405 Location: 1422849-1423089 bp Feature: domain Description: DUF5405 Location: 1 422849-1 423089 bp Feature: gene Location: 1423096-1425381 bp Feature: domain Description: Phage_GPA Location: 1423495-1424482 bp Feature: domain Description: Phage_GPA Location: 1 423495-1 424482 bp Feature: gene Location: 1425485-1427197 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1426067-1426520 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 426067-1 426520 bp Feature: gene Location: 1427210-1427371 bp Feature: gene Location: 1427410-1428444 bp Feature: domain Description: Q Location: 1427413-1428436 bp Feature: domain Description: Q Location: 1 42741 3-1 428436 bp Feature: gene Location: 2874121-2874867 bp Feature: domain Description: FocA Location: 2874205-2874838 bp Feature: domain Description: FocA Location: 2874205-2874838 bp Feature: gene Location: 2875218-2876432 bp Feature: domain Description: PRK09692 Location: 2875275-2876424 bp Feature: domain Description: PRK09692 Location: 2875275-2876424 bp Feature: gene Location: 2877123-2878310 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2877270-2877843 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2877270-2877843 bp Feature: gene Location: 2879192-2879416 bp Feature: gene Location: 2879627-2882314 bp Feature: domain Description: COG4643 Location: 2879645-2880575 bp Feature: domain Description: COG4643 Location: 2879645-2880575 bp Feature: domain Description: COG5519 Location: 2880641-2882294 bp Feature: domain Description: COG551 9 Location: 2880641 -2882294 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5405 (pfam17399), Phage_GPA (pfam05840), RVT-AbiP2, Q (PHA02536), FocA (COG2116), PRK09692 (Integrase; provisional), RVT-Retrons, COG4643 (Uncharacterized domain associated with phage/plasmid primase ), COG5519 (Uncharcterized protein, DUF927 family )