myRT

myRT report for GCA_902829275.1_COOX1

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Seq: LR792683.1 Kyrpidia spormannii isolate COOX1 genome assembly, chromosome: 1 (3310423 bp)
Overview 1 RT 1: 223674-226569 bp 2 RT 2: 448967-456113 bp 3 RT 3: 837714-842268 bp 4 RT 4: 1370141-1374784 bp 5 RT 5: 2157114-2162366 bp 6 RT 6: 2261784-2265805 bp 7 RT 7: 2289390-2295176 bp Neighborhood of RT #1 [223674, 226569] MntH RVT-GII CDA1 Neighborhood of RT #2 [448967, 456113] group_II_RT_mat RVT-GII GIIM RVT-GII GIIM RVT-GII GIIM SF1_C_Upf1 Neighborhood of RT #3 [837714, 842285] group_II_RT_mat RVT-GII GIIM PRK11867 OAFO_sf Neighborhood of RT #4 [1370141, 1374861] M48B_Htpx_like RVT-GII Glug Glug Glug Glug Glug Glug Glug Glug Glug BID_2 BID_2 SLH SLH SLH Neighborhood of RT #5 [2157114, 2162407] ABC_ATPase LysM 3D_containing_proteins RVT-GII GIIM PRK08295 Neighborhood of RT #6 [2261784, 2265822] EmrA EmrA GIIM RVT-GII PRK11522 Neighborhood of RT #7 [2289390, 2295176] MmsB RVT-GII GIIM RVT-GII GIIM RVT-GII Feature: gene Location: 223674-224042 bp Ori: CAB3390124.1 Feature: domain Description: MntH Location: 223782-224022 bp Feature: domain Description: MntH Location: 223782-224022 bp Feature: gene Location: 224021-224236 bp Feature: gene Location: 224400-225629 bp Ori: CAB3390128.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224745-225363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224745-225363 bp Feature: gene Location: 225597-226490 bp Ori: CAB3390130.1 Feature: domain Description: CDA1 Location: 225843-226464 bp Feature: domain Description: CDA1 Location: 225843-226464 bp Feature: gene Location: 226225-226569 bp Feature: gene Location: 448967-449275 bp Feature: gene Location: 449316-449744 bp Ori: CAB3390639.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 449538-449721 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 449538-449721 bp Feature: gene Location: 449723-450754 bp Ori: CAB3390641.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449726-450305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 449726-450305 bp Feature: domain Description: GIIM Note: maturase Location: 450362-450587 bp Feature: domain Description: GIIM Note: maturase Location: 450362-450587 bp Feature: gene Location: 450836-451144 bp Feature: gene Location: 451185-451646 bp Feature: gene Location: 451447-452616 bp Ori: CAB3390647.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 451567-452167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 451 567-4521 67 bp Feature: domain Description: GIIM Note: maturase Location: 452224-452449 bp Feature: domain Description: GIIM Note: maturase Location: 452224-452449 bp Feature: gene Location: 452698-452979 bp Feature: gene Location: 453046-454449 bp Ori: CAB3390651.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453394-454000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453394-454000 bp Feature: domain Description: GIIM Note: maturase Location: 454057-454282 bp Feature: domain Description: GIIM Note: maturase Location: 454057-454282 bp Feature: gene Location: 454962-455156 bp Ori: CAB3390653.1 Feature: domain Description: SF1_C_Upf1 Location: 455022-455127 bp Feature: domain Description: SF1 _C_Upf1 Location: 455022-4551 27 bp Feature: gene Location: 455400-456113 bp Feature: gene Location: 837714-838022 bp Feature: gene Location: 838289-838498 bp Ori: CAB3391445.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 838295-838469 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 838295-838469 bp Feature: gene Location: 838477-839520 bp Ori: CAB3391447.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838480-839071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838480-839071 bp Feature: domain Description: GIIM Note: maturase Location: 839128-839353 bp Feature: domain Description: GIIM Note: maturase Location: 8391 28-839353 bp Feature: gene Location: 839689-840552 bp Ori: CAB3391449.1 Feature: domain Description: PRK11867 Location: 839695-840493 bp Feature: domain Description: PRK1 1 867 Location: 839695-840493 bp Feature: gene Location: 840555-842285 bp Ori: CAB3391451.1 Feature: domain Description: OAFO_sf Location: 840567-842268 bp Feature: domain Description: OAFO_sf Location: 840567-842268 bp Feature: gene Location: 1370141-1371076 bp Ori: CAB3392653.1 Feature: domain Description: M48B_Htpx_like Location: 1370345-1371053 bp Feature: domain Description: M48B_Htpx_like Location: 1 370345-1 371 053 bp Feature: gene Location: 1371129-1371371 bp Feature: gene Location: 1371317-1371553 bp Ori: CAB3392657.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1371335-1371449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 371 335-1 371 449 bp Feature: gene Location: 1372055-1372543 bp Feature: gene Location: 1372504-1374861 bp Ori: CAB3392661.1 Feature: domain Description: Glug Location: 1372564-1372651 bp Feature: domain Description: Glug Location: 1 372564-1 372651 bp Feature: domain Description: Glug Location: 1372681-1372759 bp Feature: domain Description: Glug Location: 1 372681 -1 372759 bp Feature: domain Description: Glug Location: 1372768-1372837 bp Feature: domain Description: Glug Location: 1 372768-1 372837 bp Feature: domain Description: Glug Location: 1372876-1372945 bp Feature: domain Description: Glug Location: 1 372876-1 372945 bp Feature: domain Description: Glug Location: 1372969-1373011 bp Feature: domain Description: Glug Location: 1 372969-1 37301 1 bp Feature: domain Description: Glug Location: 1373059-1373149 bp Feature: domain Description: Glug Location: 1 373059-1 3731 49 bp Feature: domain Description: Glug Location: 1373263-1373335 bp Feature: domain Description: Glug Location: 1 373263-1 373335 bp Feature: domain Description: Glug Location: 1373353-1373425 bp Feature: domain Description: Glug Location: 1 373353-1 373425 bp Feature: domain Description: Glug Location: 1373449-1373503 bp Feature: domain Description: Glug Location: 1 373449-1 373503 bp Feature: domain Description: BID_2 Location: 1373761-1373908 bp Feature: domain Description: BID_2 Location: 1 373761 -1 373908 bp Feature: domain Description: BID_2 Location: 1374034-1374247 bp Feature: domain Description: BID_2 Location: 1 374034-1 374247 bp Feature: domain Description: SLH Location: 1374292-1374415 bp Feature: domain Description: SLH Location: 1 374292-1 37441 5 bp Feature: domain Description: SLH Location: 1374469-1374595 bp Feature: domain Description: SLH Location: 1 374469-1 374595 bp Feature: domain Description: SLH Location: 1374655-1374784 bp Feature: domain Description: SLH Location: 1 374655-1 374784 bp Feature: gene Location: 2157114-2158832 bp Ori: CAB3394316.1 Feature: domain Description: ABC_ATPase Location: 2157144-2158452 bp Feature: domain Description: ABC_ATPase Location: 21 571 44-21 58452 bp Feature: gene Location: 2158992-2159738 bp Ori: CAB3394318.1 Feature: domain Description: LysM Location: 2159205-2159334 bp Feature: domain Description: LysM Location: 21 59205-21 59334 bp Feature: domain Description: 3D_containing_proteins Location: 2159433-2159715 bp Feature: domain Description: 3D_containing_proteins Location: 21 59433-21 5971 5 bp Feature: gene Location: 2159881-2161338 bp Ori: CAB3394320.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2160271-2160889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 60271 -21 60889 bp Feature: domain Description: GIIM Note: maturase Location: 2160946-2161171 bp Feature: domain Description: GIIM Note: maturase Location: 21 60946-21 61 1 71 bp Feature: gene Location: 2161379-2161687 bp Feature: gene Location: 2161787-2162407 bp Ori: CAB3394324.1 Feature: domain Description: PRK08295 Location: 2161823-2162366 bp Feature: domain Description: PRK08295 Location: 21 61 823-21 62366 bp Feature: gene Location: 2261784-2262347 bp Ori: CAB3394549.1 Gene: yhbJ Feature: domain Description: EmrA Location: 2261817-2262006 bp Feature: domain Description: EmrA Location: 2261 81 7-2262006 bp Feature: domain Description: EmrA Location: 2262054-2262345 bp Feature: domain Description: EmrA Location: 2262054-2262345 bp Feature: gene Location: 2262540-2263028 bp Ori: CAB3394551.1 Feature: domain Description: GIIM Note: maturase Location: 2262636-2262861 bp Feature: domain Description: GIIM Note: maturase Location: 2262636-2262861 bp Feature: gene Location: 2263058-2263993 bp Ori: CAB3394553.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2263448-2263955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2263448-2263955 bp Feature: gene Location: 2264034-2264393 bp Feature: gene Location: 2264476-2265822 bp Ori: CAB3394557.1 Gene: patA Feature: domain Description: PRK11522 Location: 2264488-2265805 bp Feature: domain Description: PRK1 1 522 Location: 2264488-2265805 bp Feature: gene Location: 2289390-2290280 bp Ori: CAB3394598.1 Feature: domain Description: MmsB Location: 2289402-2290242 bp Feature: domain Description: MmsB Location: 2289402-2290242 bp Feature: gene Location: 2290383-2291261 bp Feature: gene Location: 2291466-2292878 bp Ori: CAB3394602.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2291811-2292429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2291 81 1 -2292429 bp Feature: domain Description: GIIM Note: maturase Location: 2292486-2292711 bp Feature: domain Description: GIIM Note: maturase Location: 2292486-229271 1 bp Feature: gene Location: 2293057-2293281 bp Feature: gene Location: 2293354-2294196 bp Ori: CAB3394606.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2293363-2293747 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2293363-2293747 bp Feature: domain Description: GIIM Note: maturase Location: 2293804-2294029 bp Feature: domain Description: GIIM Note: maturase Location: 2293804-2294029 bp Feature: gene Location: 2294177-2294767 bp Ori: CAB3394608.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2294522-2294753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2294522-2294753 bp Feature: gene Location: 2294854-2294958 bp Feature: gene Location: 2294946-2295176 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MntH (COG1914), RVT-GII, CDA1 (COG0726), group_II_RT_mat (TIGR04416), GIIM (pfam08388), SF1_C_Upf1 (cd18808), PRK11867 (2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed), OAFO_sf (TIGR03710), M48B_Htpx_like (cd07340), Glug (pfam07581)
BID_2 (smart00635), SLH (pfam00395), ABC_ATPase (pfam09818), LysM (smart00257), 3D_containing_proteins (cd14667), PRK08295 (RNA polymerase sporulation sigma factor SigH), EmrA (COG1566), PRK11522 (putrescine--2-oxoglutarate aminotransferase; Provisional), MmsB (COG2084)