myRT

myRT report for GCA_000073005.1_ASM7300v1

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Seq: AM999887.1 Wolbachia endosymbiont of Culex quinquefasciatus Pel strain wPip complete genome (1482455 bp)
Overview 1 RT 1: 176094-180227 bp 2 RT 2: 282022-289249 bp 3 RT 3: 354457-358858 bp 4 RT 4: 1039941-1047836 bp Neighborhood of RT #1 [176094, 180227] DDE_Tnp_1 DDE_Tnp_1_5 RVT-GII GIIM holA Neighborhood of RT #2 [282022, 289249] mutL rnhA RVT-GII GIIM PDDEXK_2 Neighborhood of RT #3 [354457, 358920] Tail_P2_I RVT-GII ANK ANK Ank ANK Neighborhood of RT #4 [1039941, 1047886] PerM PerM RVT-GII GIIM RVT_N RVT-GII RVT-GII GIIM RVT-GII GIIM PRK09087 Feature: gene Location: 176094-176477 bp Feature: domain Description: DDE_Tnp_1 Location: 176103-176418 bp Feature: domain Description: DDE_Tnp_1 Location: 1 761 03-1 7641 8 bp Feature: gene Location: 176646-177029 bp Feature: domain Description: DDE_Tnp_1_5 Location: 176703-177024 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 1 76703-1 77024 bp Feature: gene Location: 177195-178439 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177399-178056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 77399-1 78056 bp Feature: domain Description: GIIM Note: maturase Location: 178137-178356 bp Feature: domain Description: GIIM Note: maturase Location: 1 781 37-1 78356 bp Feature: gene Location: 179020-180039 bp Feature: domain Description: holA Location: 179023-179989 bp Feature: domain Description: holA Location: 1 79023-1 79989 bp Feature: gene Location: 180045-180227 bp Feature: gene Location: 282022-283830 bp Feature: domain Description: mutL Location: 282025-283825 bp Feature: domain Description: mutL Location: 282025-283825 bp Feature: gene Location: 283821-284354 bp Feature: domain Description: rnhA Location: 283833-284274 bp Feature: domain Description: rnhA Location: 283833-284274 bp Feature: gene Location: 284961-286304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285246-285885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285246-285885 bp Feature: domain Description: GIIM Note: maturase Location: 285957-286176 bp Feature: domain Description: GIIM Note: maturase Location: 285957-2861 76 bp Feature: gene Location: 286815-287666 bp Feature: domain Description: PDDEXK_2 Location: 286818-287475 bp Feature: domain Description: PDDEXK_2 Location: 28681 8-287475 bp Feature: gene Location: 287774-289249 bp Feature: gene Location: 354457-355617 bp Feature: domain Description: Tail_P2_I Location: 354466-354790 bp Feature: domain Description: Tail_P2_I Location: 354466-354790 bp Feature: gene Location: 355786-356112 bp Feature: gene Location: 356283-357584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356538-357228 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356538-357228 bp Feature: gene Location: 357596-358408 bp Feature: domain Description: ANK Location: 357761-358112 bp Feature: domain Description: ANK Location: 357761 -3581 1 2 bp Feature: gene Location: 358447-358920 bp Feature: domain Description: ANK Location: 358486-358567 bp Feature: domain Description: ANK Location: 358486-358567 bp Feature: domain Description: Ank Location: 358624-358708 bp Feature: domain Description: Ank Location: 358624-358708 bp Feature: domain Description: ANK Location: 358732-358858 bp Feature: domain Description: ANK Location: 358732-358858 bp Feature: gene Location: 1039941-1040390 bp Feature: domain Description: PerM Location: 1039962-1040367 bp Feature: domain Description: PerM Location: 1 039962-1 040367 bp Feature: gene Location: 1042378-1043001 bp Feature: domain Description: PerM Location: 1042393-1042987 bp Feature: domain Description: PerM Location: 1 042393-1 042987 bp Feature: gene Location: 1040903-1042246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1041188-1041827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 041 1 88-1 041 827 bp Feature: domain Description: GIIM Note: maturase Location: 1041899-1042118 bp Feature: domain Description: GIIM Note: maturase Location: 1 041 899-1 0421 1 8 bp Feature: gene Location: 1043043-1043243 bp Feature: gene Location: 1043404-1043682 bp Feature: gene Location: 1043679-1044518 bp Feature: RT Description: RVT_N Location: 1043730-1043973 bp Feature: RT Description: RVT_N Location: 1 043730-1 043973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1044018-1044519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 04401 8-1 04451 9 bp Feature: gene Location: 1046367-1047074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1046376-1046517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 046376-1 04651 7 bp Feature: domain Description: GIIM Note: maturase Location: 1046568-1046802 bp Feature: domain Description: GIIM Note: maturase Location: 1 046568-1 046802 bp Feature: gene Location: 1045042-1046286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1045246-1045903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 045246-1 045903 bp Feature: domain Description: GIIM Note: maturase Location: 1045984-1046203 bp Feature: domain Description: GIIM Note: maturase Location: 1 045984-1 046203 bp Feature: gene Location: 1047071-1047232 bp Feature: gene Location: 1047251-1047886 bp Feature: domain Description: PRK09087 Location: 1047281-1047836 bp Feature: domain Description: PRK09087 Location: 1 047281 -1 047836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), DDE_Tnp_1_5 (pfam13737), RVT-GII, GIIM (pfam08388), holA (TIGR01128), mutL (PRK00095), rnhA (PRK13907), PDDEXK_2 (pfam12784), Tail_P2_I (pfam09684), ANK (smart00248)
Ank (pfam00023), PerM (COG0628), RVT_N (pfam13655), PRK09087 (hypothetical protein; Validated)