myRT

myRT report for GCA_000153205.1_ASM15320v1

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Seq: CH672427.1 Nitrococcus mobilis Nb-231 scf_1099646003885 genomic scaffold, whole genome shotgun sequence (3613155 bp)
Overview 1 RT 1: 1705581-1714213 bp 2 RT 2: 1912783-1918028 bp 3 RT 3: 2350138-2357371 bp 4 RT 4: 2578034-2592705 bp Neighborhood of RT #1 [1705581, 1714428] DDE_Tnp_1_4 DDE_Tnp_1_4 RVT-GII GIIM RVT-GII DDE_Tnp_IS66 DDE_Tnp_1 RVT_N RVT-GII DDE_3 HTH_32 Neighborhood of RT #2 [1912783, 1918465] RVT-GII GIIM Zn_ribbon_recom Recombinase Resolvase RHH_1 RVT-GII PBECR3 Neighborhood of RT #3 [2350138, 2357490] GGCT_like GGCT_like Tnp_DNA_bind RVT-GII Resolvase Recombinase Zn_ribbon_recom RHH_1 RVT-GII GIIM Dimer_Tnp_Tn5 DDE_3 Neighborhood of RT #4 [2578034, 2592705] NUC1 RVT-GII RHH_1 Resolvase Recombinase Zn_ribbon_recom RVT-CRISPR-like RVT-GII GIIM IS5 TIR_2 RVT-GII Feature: gene Location: 1705581-1706225 bp Ori: EAR21156.1 Feature: domain Description: DDE_Tnp_1_4 Location: 1705617-1705782 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 1 70561 7-1 705782 bp Feature: domain Description: DDE_Tnp_1_4 Location: 1706076-1706223 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 1 706076-1 706223 bp Feature: gene Location: 1706326-1706463 bp Feature: gene Location: 1706547-1707323 bp Ori: EAR21246.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1706550-1706892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 706550-1 706892 bp Feature: domain Description: GIIM Note: maturase Location: 1706937-1707147 bp Feature: domain Description: GIIM Note: maturase Location: 1 706937-1 7071 47 bp Feature: gene Location: 1707367-1707810 bp Ori: EAR21247.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1707577-1707808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 707577-1 707808 bp Feature: gene Location: 1708878-1709669 bp Ori: EAR21248.1 Feature: domain Description: DDE_Tnp_IS66 Location: 1709070-1709487 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 709070-1 709487 bp Feature: gene Location: 1709934-1710506 bp Feature: gene Location: 1710696-1711916 bp Ori: EAR21250.1 Feature: domain Description: DDE_Tnp_1 Location: 1711071-1711620 bp Feature: domain Description: DDE_Tnp_1 Location: 1 71 1 071 -1 71 1 620 bp Feature: gene Location: 1712539-1713315 bp Ori: EAR21251.1 Feature: domain Description: RVT_N Location: 1712590-1712833 bp Feature: domain Description: RVT_N Location: 1 71 2590-1 71 2833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1712878-1713298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 2878-1 71 3298 bp Feature: gene Location: 1713294-1713791 bp Ori: EAR21252.1 Feature: domain Description: DDE_3 Location: 1713303-1713672 bp Feature: domain Description: DDE_3 Location: 1 71 3303-1 71 3672 bp Feature: gene Location: 1713778-1714428 bp Ori: EAR21253.1 Feature: domain Description: HTH_32 Location: 1713982-1714213 bp Feature: domain Description: HTH_32 Location: 1 71 3982-1 71 421 3 bp Feature: gene Location: 1912783-1912908 bp Feature: gene Location: 1912905-1913027 bp Feature: gene Location: 1913061-1913549 bp Ori: EAR22628.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1913067-1913160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 3067-1 91 31 60 bp Feature: domain Description: GIIM Note: maturase Location: 1913232-1913445 bp Feature: domain Description: GIIM Note: maturase Location: 1 91 3232-1 91 3445 bp Feature: gene Location: 1913500-1914570 bp Ori: EAR22629.1 Feature: domain Description: Zn_ribbon_recom Location: 1913659-1913842 bp Feature: domain Description: Zn_ribbon_recom Location: 1 91 3659-1 91 3842 bp Feature: gene Location: 1914548-1914829 bp Ori: EAR22630.1 Feature: domain Description: Recombinase Location: 1914560-1914770 bp Feature: domain Description: Recombinase Location: 1 91 4560-1 91 4770 bp Feature: gene Location: 1914833-1915357 bp Ori: EAR22631.1 Feature: domain Description: Resolvase Location: 1914845-1915286 bp Feature: domain Description: Resolvase Location: 1 91 4845-1 91 5286 bp Feature: gene Location: 1915504-1915833 bp Ori: EAR22632.1 Feature: domain Description: RHH_1 Location: 1915705-1915813 bp Feature: domain Description: RHH_1 Location: 1 91 5705-1 91 581 3 bp Feature: gene Location: 1915931-1916638 bp Ori: EAR22633.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1916219-1916636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 91 621 9-1 91 6636 bp Feature: gene Location: 1916632-1916979 bp Feature: gene Location: 1917398-1918465 bp Ori: EAR22635.1 Feature: domain Description: PBECR3 Location: 1917689-1918028 bp Feature: domain Description: PBECR3 Location: 1 91 7689-1 91 8028 bp Feature: gene Location: 2350138-2350983 bp Ori: EAR22339.1 Feature: domain Description: GGCT_like Location: 2350147-2350450 bp Feature: domain Description: GGCT_like Location: 23501 47-2350450 bp Feature: domain Description: GGCT_like Location: 2350540-2350825 bp Feature: domain Description: GGCT_like Location: 2350540-2350825 bp Feature: gene Location: 2351047-2352237 bp Ori: EAR22340.1 Feature: domain Description: Tnp_DNA_bind Location: 2351056-2351224 bp Feature: domain Description: Tnp_DNA_bind Location: 2351 056-2351 224 bp Feature: gene Location: 2352841-2353152 bp Ori: EAR22341.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2352844-2353150 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2352844-23531 50 bp Feature: gene Location: 2352928-2354802 bp Ori: EAR22342.1 Feature: domain Description: Resolvase Location: 2352940-2353381 bp Feature: domain Description: Resolvase Location: 2352940-2353381 bp Feature: domain Description: Recombinase Location: 2353468-2353831 bp Feature: domain Description: Recombinase Location: 2353468-2353831 bp Feature: domain Description: Zn_ribbon_recom Location: 2353876-2354059 bp Feature: domain Description: Zn_ribbon_recom Location: 2353876-2354059 bp Feature: gene Location: 2354949-2355278 bp Ori: EAR22343.1 Feature: domain Description: RHH_1 Location: 2355150-2355258 bp Feature: domain Description: RHH_1 Location: 23551 50-2355258 bp Feature: gene Location: 2355383-2356054 bp Ori: EAR22344.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2355386-2355668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2355386-2355668 bp Feature: domain Description: GIIM Note: maturase Location: 2355749-2355971 bp Feature: domain Description: GIIM Note: maturase Location: 2355749-2355971 bp Feature: gene Location: 2356222-2356611 bp Ori: EAR22345.1 Feature: domain Description: Dimer_Tnp_Tn5 Location: 2356306-2356582 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 2356306-2356582 bp Feature: gene Location: 2356828-2357490 bp Ori: EAR22346.1 Feature: domain Description: DDE_3 Location: 2356921-2357371 bp Feature: domain Description: DDE_3 Location: 2356921 -2357371 bp Feature: gene Location: 2578034-2579086 bp Feature: gene Location: 2579712-2580515 bp Ori: EAR22537.1 Feature: domain Description: NUC1 Location: 2579829-2580465 bp Feature: domain Description: NUC1 Location: 2579829-2580465 bp Feature: gene Location: 2581284-2581880 bp Ori: EAR22538.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2581488-2581878 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2581 488-2581 878 bp Feature: gene Location: 2581978-2582307 bp Ori: EAR22539.1 Feature: domain Description: RHH_1 Location: 2582179-2582287 bp Feature: domain Description: RHH_1 Location: 25821 79-2582287 bp Feature: gene Location: 2582454-2584148 bp Ori: EAR22540.1 Feature: domain Description: Resolvase Location: 2582466-2582907 bp Feature: domain Description: Resolvase Location: 2582466-2582907 bp Feature: domain Description: Recombinase Location: 2582994-2583357 bp Feature: domain Description: Recombinase Location: 2582994-2583357 bp Feature: domain Description: Zn_ribbon_recom Location: 2583402-2583585 bp Feature: domain Description: Zn_ribbon_recom Location: 2583402-2583585 bp Feature: gene Location: 2584111-2584194 bp Ori: EAR22541.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 2584114-2584192 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 25841 1 4-25841 92 bp Feature: gene Location: 2584210-2584434 bp Ori: EAR22542.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2584213-2584351 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258421 3-2584351 bp Feature: gene Location: 2584444-2584788 bp Ori: EAR22543.1 Feature: domain Description: GIIM Note: maturase Location: 2584456-2584597 bp Feature: domain Description: GIIM Note: maturase Location: 2584456-2584597 bp Feature: gene Location: 2585017-2585970 bp Ori: EAR22544.1 Feature: domain Description: IS5 Location: 2585209-2585959 bp Feature: domain Description: IS5 Location: 2585209-2585959 bp Feature: gene Location: 2587785-2588594 bp Ori: EAR22547.1 Feature: domain Description: TIR_2 Location: 2587800-2588160 bp Feature: domain Description: TIR_2 Location: 2587800-25881 60 bp Feature: gene Location: 2588762-2589442 bp Feature: gene Location: 2590035-2590703 bp Ori: EAR22549.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2590239-2590608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2590239-2590608 bp Feature: gene Location: 2591115-2591420 bp Feature: gene Location: 2592418-2592705 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_4 (pfam13701), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_1 (pfam01609), RVT_N (pfam13655), DDE_3 (pfam13358), HTH_32 (pfam13565), Zn_ribbon_recom (pfam13408), Recombinase (pfam07508)
Resolvase (smart00857), RHH_1 (pfam01402), PBECR3 (pfam18812), GGCT_like (cl22886), Tnp_DNA_bind (pfam14706), Dimer_Tnp_Tn5 (pfam02281), NUC1 (COG1864), RVT-CRISPR, IS5 (COG3039), TIR_2 (pfam13676)