myRT

myRT report for GCA_000153245.1_ASM15324v1

Download annotations/find similar RTs

Seq: CH959302.1 Pseudoalteromonas tunicata D2 scf_1099591001457 genomic scaffold, whole genome shotgun sequence (222871 bp)
Overview 1 RT 1: 59743-63187 bp Neighborhood of RT #1 [59743, 63187] SLR RVT-GII Feature: gene Location: 59743-59844 bp Feature: gene Location: 60405-60701 bp Ori: EAR26773.1 Feature: domain Description: SLR Location: 60486-60687 bp Feature: domain Description: SLR Location: 60486-60687 bp Feature: gene Location: 60865-62154 bp Ori: EAR26774.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61120-61786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 1 20-61 786 bp Feature: gene Location: 62247-62375 bp Feature: gene Location: 62657-63187 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLR (sd00010), RVT-GII

Seq: AAOH01000014.1 Pseudoalteromonas tunicata D2 1099591001415, whole genome shotgun sequence (52065 bp)
Overview 1 RT 1: 20410-23201 bp Neighborhood of RT #1 [20410, 23201] RVT-GII group_II_RT_mat Feature: gene Location: 20410-20928 bp Feature: gene Location: 21335-21463 bp Feature: gene Location: 21556-22392 bp Ori: EAR26451.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21811-22384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1811-2 2 384 bp Feature: gene Location: 22476-22859 bp Ori: EAR26452.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 22482-22752 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2 2 482 -2 2 752 bp Feature: gene Location: 22992-23201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: CH959301.1 Pseudoalteromonas tunicata D2 scf_1099591001458 genomic scaffold, whole genome shotgun sequence (1143835 bp)
Overview 1 RT 1: 853011-856865 bp 2 RT 2: 1050833-1054503 bp Neighborhood of RT #1 [853011, 856865] DUF262 RVT-GII RVT-GII Neighborhood of RT #2 [1050833, 1054503] COG3547 Tryp_SPc RVT-GII Feature: gene Location: 853011-854042 bp Ori: EAR28374.1 Feature: domain Description: DUF262 Location: 853077-853497 bp Feature: domain Description: DUF262 Location: 853 077-853 497 bp Feature: gene Location: 854204-854497 bp Feature: gene Location: 855108-855398 bp Ori: EAR28376.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 855114-855390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 855114-8553 90 bp Feature: gene Location: 855476-855946 bp Ori: EAR28377.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 855731-855905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 85573 1-855905 bp Feature: gene Location: 856039-856167 bp Feature: gene Location: 856548-856865 bp Feature: gene Location: 1050833-1051591 bp Ori: EAR28588.1 Feature: domain Description: COG3547 Location: 1050860-1051574 bp Feature: domain Description: COG3 547 Location: 1050860-1051574 bp Feature: gene Location: 1051634-1052428 bp Ori: EAR28589.1 Feature: domain Description: Tryp_SPc Location: 1051784-1052414 bp Feature: domain Description: Tryp_SPc Location: 1051784-1052414 bp Feature: gene Location: 1052594-1053883 bp Ori: EAR28590.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1052849-1053515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1052849-1053 515 bp Feature: gene Location: 1053976-1054092 bp Feature: gene Location: 1054384-1054503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), RVT-GII, COG3547 (Transposase ), Tryp_SPc (smart00020)

Seq: AAOH01000002.1 Pseudoalteromonas tunicata D2 1099591001423, whole genome shotgun sequence (864584 bp)
Overview 1 RT 1: 112957-116494 bp Neighborhood of RT #1 [112957, 116494] HEAT_2 RVT-GII RVT-GII Feature: gene Location: 112957-113376 bp Feature: gene Location: 113463-113843 bp Ori: EAR29337.1 Feature: domain Description: HEAT_2 Location: 113514-113673 bp Feature: domain Description: HEAT_2 Location: 113514 -113673 bp Feature: gene Location: 113960-114532 bp Ori: EAR29338.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113975-114164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113975-114 164 bp Feature: gene Location: 114664-115248 bp Ori: EAR29339.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114919-115237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114 919-115237 bp Feature: gene Location: 115341-115469 bp Feature: gene Location: 115862-116494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEAT_2 (pfam13646), RVT-GII

Seq: AAOH01000003.1 Pseudoalteromonas tunicata D2 1099591001419, whole genome shotgun sequence (660254 bp)
Overview 1 RT 1: 352226-356121 bp Neighborhood of RT #1 [352226, 356126] PRK10565 RVT-GII Nnr2 PRK10646 Feature: gene Location: 352226-353461 bp Ori: EAR28936.1 Feature: domain Description: PRK10565 Location: 352247-353459 bp Feature: domain Description: PRK105 65 Location: 35 2247-35 345 9 bp Feature: gene Location: 353760-353888 bp Feature: gene Location: 353981-355270 bp Ori: EAR28938.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354236-354902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35 4236-35 4902 bp Feature: gene Location: 355361-355660 bp Ori: EAR28939.1 Feature: domain Description: Nnr2 Location: 355379-355655 bp Feature: domain Description: Nnr2 Location: 35 5 379-35 5 65 5 bp Feature: gene Location: 355677-356126 bp Ori: EAR28940.1 Feature: domain Description: PRK10646 Location: 355695-356121 bp Feature: domain Description: PRK10646 Location: 35 5 695 -35 6121 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10565 (putative carbohydrate kinase; Provisional), RVT-GII, Nnr2 (COG0063), PRK10646 (tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE)

Seq: AAOH01000001.1 Pseudoalteromonas tunicata D2 1099591001414, whole genome shotgun sequence (986309 bp)
Overview 1 RT 1: 115200-119551 bp 2 RT 2: 247681-251329 bp 3 RT 3: 356562-366457 bp Neighborhood of RT #1 [115200, 119551] RVT-GII Neighborhood of RT #2 [247681, 251329] RVT-GII Neighborhood of RT #3 [356562, 366457] YoeB_toxin PRK11409 RVT-GII GIIM MPP_Shelphs DUF998 Acetyltransf_1 GATase1_PfpI_2 RVT-GII RVT-GII RVT-GII Feature: gene Location: 115200-115499 bp Feature: gene Location: 115979-116869 bp Feature: gene Location: 117040-118329 bp Ori: EAR30073.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117295-117961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117295-11796 1 bp Feature: gene Location: 118422-118538 bp Feature: gene Location: 118943-119551 bp Feature: gene Location: 247681-247893 bp Feature: gene Location: 247978-248364 bp Feature: gene Location: 248496-249785 bp Ori: EAR30189.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248751-249417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248751-249417 bp Feature: gene Location: 249878-250006 bp Feature: gene Location: 250370-251329 bp Feature: gene Location: 356562-356825 bp Ori: EAR30284.1 Feature: domain Description: YoeB_toxin Location: 356586-356823 bp Feature: domain Description: YoeB_toxin Location: 356 586 -356 823 bp Feature: gene Location: 356818-357072 bp Ori: EAR30285.1 Feature: domain Description: PRK11409 Location: 356821-357067 bp Feature: domain Description: PRK11409 Location: 356 821-35706 7 bp Feature: gene Location: 358119-358460 bp Ori: EAR30286.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358125-358215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 358125-358215 bp Feature: domain Description: GIIM Note: maturase Location: 358254-358455 bp Feature: domain Description: GIIM Note: maturase Location: 358254-358455 bp Feature: gene Location: 358742-359797 bp Ori: EAR30287.1 Feature: domain Description: MPP_Shelphs Location: 358985-359726 bp Feature: domain Description: MPP_Shelphs Location: 358985-359726 bp Feature: gene Location: 360686-361291 bp Ori: EAR30288.1 Feature: domain Description: DUF998 Location: 360719-361280 bp Feature: domain Description: DUF998 Location: 36 0719-36 1280 bp Feature: gene Location: 363082-363558 bp Ori: EAR30291.1 Feature: domain Description: Acetyltransf_1 Location: 363124-363490 bp Feature: domain Description: Acetyltransf_1 Location: 36 3124-36 3490 bp Feature: gene Location: 363824-364402 bp Ori: EAR30292.1 Feature: domain Description: GATase1_PfpI_2 Location: 363833-364385 bp Feature: domain Description: GATase1_PfpI_2 Location: 36 3833-36 4385 bp Feature: gene Location: 365001-365291 bp Ori: EAR30293.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365007-365283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36 5007-36 5283 bp Feature: gene Location: 365285-365461 bp Ori: EAR30294.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365291-365444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36 5291-36 5444 bp Feature: gene Location: 365466-365840 bp Ori: EAR30295.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365721-365835 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36 5721-36 5835 bp Feature: gene Location: 365933-366061 bp Feature: gene Location: 366308-366457 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YoeB_toxin (pfam06769), PRK11409 (YoeB-YefM toxin-antitoxin system antitoxin YefM), GIIM (pfam08388), MPP_Shelphs (cd07425), DUF998 (pfam06197), Acetyltransf_1 (pfam00583), GATase1_PfpI_2 (cd03139)