myRT

myRT report for GCA_000153905.1_ASM15390v1

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Seq: DS264338.1 Ruminococcus obeum ATCC 29174 Scfld0249 genomic scaffold, whole genome shotgun sequence (433990 bp)
Overview 1 RT 1: 156510-161869 bp Neighborhood of RT #1 [156510, 161874] RepA_N RVT-GII Intron_maturas2 ParB_N_like BcsQ Feature: gene Location: 156510-157646 bp Feature: domain Description: RepA_N Location: 156636-156858 bp Feature: domain Description: RepA_N Location: 1 56636-1 56858 bp Feature: gene Location: 157612-158091 bp Feature: gene Location: 158260-160083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158536-159367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 58536-1 59367 bp Feature: domain Description: Intron_maturas2 Location: 159439-159745 bp Feature: domain Description: Intron_maturas2 Location: 1 59439-1 59745 bp Feature: gene Location: 160737-161105 bp Feature: domain Description: ParB_N_like Location: 160842-161094 bp Feature: domain Description: ParB_N_like Location: 1 60842-1 61 094 bp Feature: gene Location: 161098-161874 bp Feature: domain Description: BcsQ Location: 161101-161869 bp Feature: domain Description: BcsQ Location: 1 61 1 01 -1 61 869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RepA_N (pfam06970), RVT-GII, Intron_maturas2 (pfam01348), ParB_N_like (cd16411), BcsQ (COG1192)

Seq: DS264289.1 Ruminococcus obeum ATCC 29174 Scfld020 genomic scaffold, whole genome shotgun sequence (178566 bp)
Overview 1 RT 1: 17062-21627 bp 2 RT 2: 59141-65121 bp Neighborhood of RT #1 [17062, 22343] BcsQ ParB_N_like RVT-GII Intron_maturas2 RepA_N Neighborhood of RT #2 [59141, 66020] Phage_int_SAM_3 INT_ICEBs1_C_like ParB_N_like RVT-GII Intron_maturas2 RepA_N Feature: gene Location: 17062-17838 bp Feature: domain Description: BcsQ Location: 17065-17830 bp Feature: domain Description: BcsQ Location: 17065-17830 bp Feature: gene Location: 17831-18199 bp Feature: domain Description: ParB_N_like Location: 17939-18188 bp Feature: domain Description: ParB_N_like Location: 17939-18188 bp Feature: gene Location: 18853-20676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19129-19960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1912 9-19960 bp Feature: domain Description: Intron_maturas2 Location: 20032-20338 bp Feature: domain Description: Intron_maturas2 Location: 2 0032 -2 0338 bp Feature: gene Location: 20845-21363 bp Feature: gene Location: 21360-22343 bp Feature: domain Description: RepA_N Location: 21405-21627 bp Feature: domain Description: RepA_N Location: 2 1405-2 162 7 bp Feature: gene Location: 59141-60541 bp Feature: domain Description: Phage_int_SAM_3 Location: 59321-59489 bp Feature: domain Description: Phage_int_SAM_3 Location: 5932 1-59489 bp Feature: domain Description: INT_ICEBs1_C_like Location: 59696-60323 bp Feature: domain Description: INT_ICEBs1_C_like Location: 59696-6032 3 bp Feature: gene Location: 61347-61721 bp Feature: domain Description: ParB_N_like Location: 61461-61710 bp Feature: domain Description: ParB_N_like Location: 61461-61710 bp Feature: gene Location: 62375-64198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62651-63482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 651-63482 bp Feature: domain Description: Intron_maturas2 Location: 63554-63860 bp Feature: domain Description: Intron_maturas2 Location: 63554-63860 bp Feature: gene Location: 64367-64864 bp Feature: gene Location: 64845-66020 bp Feature: domain Description: RepA_N Location: 64899-65121 bp Feature: domain Description: RepA_N Location: 64899-6512 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BcsQ (COG1192), ParB_N_like (cd16411), RVT-GII, Intron_maturas2 (pfam01348), RepA_N (pfam06970), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189)

Seq: DS264296.1 Ruminococcus obeum ATCC 29174 Scfld027 genomic scaffold, whole genome shotgun sequence (58637 bp)
Overview 1 RT 1: 1-2603 bp Neighborhood of RT #1 [1, 2965] RVT-GII GIIM BID_2 Feature: gene Location: 1-113 bp Feature: gene Location: 85-231 bp Feature: gene Location: 409-1695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 700-1333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 700-13 3 3 bp Feature: domain Description: GIIM Note: maturase Location: 1414-1630 bp Feature: domain Description: GIIM Note: maturase Location: 1414-163 0 bp Feature: gene Location: 1833-1970 bp Feature: gene Location: 2315-2965 bp Feature: domain Description: BID_2 Location: 2399-2603 bp Feature: domain Description: BID_2 Location: 23 99-2603 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BID_2 (smart00635), RVT-GII, GIIM (pfam08388)

Seq: DS264311.1 Ruminococcus obeum ATCC 29174 Scfld0222 genomic scaffold, whole genome shotgun sequence (217646 bp)
Overview 1 RT 1: 58824-61334 bp Neighborhood of RT #1 [58824, 61334] RVT-DGRs DUF16 Feature: gene Location: 58824-59075 bp Feature: gene Location: 59120-59224 bp Feature: gene Location: 59202-60341 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 59406-60129 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 594 06-60129 bp Feature: gene Location: 60431-60802 bp Feature: domain Description: DUF16 Location: 60479-60701 bp Feature: domain Description: DUF16 Location: 604 79-60701 bp Feature: gene Location: 61098-61334 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, DUF16 (pfam01519)