myRT

myRT report for GCA_000154125.1_ASM15412v1

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Seq: DS264574.1 Bacteroides ovatus ATCC 8483 Scfld0221 genomic scaffold, whole genome shotgun sequence (87788 bp)
Overview 1 RT 1: 35298-40026 bp Neighborhood of RT #1 [35298, 40026] DUF3876 Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 35298-35669 bp Feature: domain Description: DUF3876 Location: 35379-35652 bp Feature: domain Description: DUF3876 Location: 35379-35652 bp Feature: gene Location: 35666-35803 bp Feature: domain Description: Bac_Flav_CT_G Location: 35669-35768 bp Feature: domain Description: Bac_Flav_CT_G Location: 35669-35768 bp Feature: gene Location: 35907-37730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36171-36993 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 71 -36993 bp Feature: domain Description: Intron_maturas2 Location: 37158-37410 bp Feature: domain Description: Intron_maturas2 Location: 371 58-3741 0 bp Feature: domain Description: HNHc Note: nucleases Location: 37521-37692 bp Feature: domain Description: HNHc Note: nucleases Location: 37521 -37692 bp Feature: gene Location: 38299-39246 bp Feature: domain Description: Bac_Flav_CT_G Location: 38302-39235 bp Feature: domain Description: Bac_Flav_CT_G Location: 38302-39235 bp Feature: gene Location: 39292-40026 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: DS264564.1 Bacteroides ovatus ATCC 8483 Scfld0211 genomic scaffold, whole genome shotgun sequence (845 bp)
Overview 1 RT 1: 1-844 bp Neighborhood of RT #1 [1, 845] RVT_N RVT-GII Feature: gene Location: 1-104 bp Feature: gene Location: 265-845 bp Feature: RT Description: RVT_N Location: 298-541 bp Feature: RT Description: RVT_N Location: 2 98-541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 586-844 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 586-844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: DS264584.1 Bacteroides ovatus ATCC 8483 Scfld0231 genomic scaffold, whole genome shotgun sequence (1147684 bp)
Overview 1 RT 1: 107896-112129 bp 2 RT 2: 638638-649978 bp Neighborhood of RT #1 [107896, 112137] RVT_N RVT-GII GIIM BcsQ Neighborhood of RT #2 [638638, 650094] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 107896-108018 bp Feature: gene Location: 107998-108114 bp Feature: gene Location: 108256-109923 bp Feature: RT Description: RVT_N Location: 108310-108553 bp Feature: RT Description: RVT_N Location: 1083 10-108553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108598-109246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108598-109246 bp Feature: domain Description: GIIM Note: maturase Location: 109300-109531 bp Feature: domain Description: GIIM Note: maturase Location: 1093 00-10953 1 bp Feature: gene Location: 109907-111022 bp Feature: gene Location: 111382-112137 bp Feature: domain Description: BcsQ Location: 111385-112129 bp Feature: domain Description: BcsQ Location: 1113 85-112129 bp Feature: gene Location: 638638-638778 bp Feature: gene Location: 638693-640900 bp Feature: gene Location: 641106-642236 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 641427-641970 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 641427-641970 bp Feature: gene Location: 642238-648195 bp Feature: domain Description: DUF4011 Location: 643468-643981 bp Feature: domain Description: DUF4011 Location: 643 468-643 981 bp Feature: domain Description: DEXXQc_SF1 Location: 644320-645181 bp Feature: domain Description: DEXXQc_SF1 Location: 6443 20-645181 bp Feature: domain Description: DEXXQc_SF1 Location: 645748-646507 bp Feature: domain Description: DEXXQc_SF1 Location: 645748-646507 bp Feature: domain Description: TIGR00376 Location: 646636-647026 bp Feature: domain Description: TIGR003 76 Location: 64663 6-647026 bp Feature: domain Description: MTES_1575 Location: 647179-647464 bp Feature: domain Description: MTES_1575 Location: 647179-647464 bp Feature: domain Description: DUF3320 Location: 647704-647845 bp Feature: domain Description: DUF3 3 20 Location: 647704-647845 bp Feature: gene Location: 648292-650094 bp Feature: domain Description: rpsA Location: 648361-649978 bp Feature: domain Description: rpsA Location: 6483 61-649978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), BcsQ (COG1192), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784)
rpsA (TIGR00717)

Seq: DS264582.1 Bacteroides ovatus ATCC 8483 Scfld0229 genomic scaffold, whole genome shotgun sequence (491071 bp)
Overview 1 RT 1: 279213-282744 bp Neighborhood of RT #1 [279213, 282744] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 279213-280022 bp Feature: domain Description: DUF1566 Location: 279744-279993 bp Feature: domain Description: DUF1566 Location: 27974 4 -279993 bp Feature: gene Location: 280169-280576 bp Feature: domain Description: Avd_like Location: 280202-280511 bp Feature: domain Description: Avd_like Location: 280202-280511 bp Feature: gene Location: 280591-282012 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 280966-281689 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 280966-281689 bp Feature: gene Location: 281975-282253 bp Feature: gene Location: 282457-282744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: DS264579.1 Bacteroides ovatus ATCC 8483 Scfld0226 genomic scaffold, whole genome shotgun sequence (428982 bp)
Overview 1 RT 1: 204278-210840 bp Neighborhood of RT #1 [204278, 210840] COG3292 COG3292 COG3292 COG3292 COG3292 Y_Y_Y BaeS PRK15347 YesN DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM Feature: gene Location: 204278-208240 bp Feature: domain Description: COG3292 Location: 204314-204470 bp Feature: domain Description: COG3292 Location: 204314-204470 bp Feature: domain Description: COG3292 Location: 204494-204794 bp Feature: domain Description: COG3292 Location: 204494-204794 bp Feature: domain Description: COG3292 Location: 204887-205130 bp Feature: domain Description: COG3292 Location: 204887-205 130 bp Feature: domain Description: COG3292 Location: 205163-205367 bp Feature: domain Description: COG3292 Location: 205 163-205 367 bp Feature: domain Description: COG3292 Location: 205445-205931 bp Feature: domain Description: COG3292 Location: 205 445 -205 931 bp Feature: domain Description: Y_Y_Y Location: 206351-206498 bp Feature: domain Description: Y_Y_Y Location: 20635 1-206498 bp Feature: domain Description: BaeS Location: 206624-207377 bp Feature: domain Description: BaeS Location: 206624-207377 bp Feature: domain Description: PRK15347 Location: 207488-207821 bp Feature: domain Description: PRK15 347 Location: 207488-207821 bp Feature: domain Description: YesN Location: 207926-208226 bp Feature: domain Description: YesN Location: 207926-208226 bp Feature: gene Location: 208279-208677 bp Feature: domain Description: DDE_Tnp_IS66 Location: 208288-208519 bp Feature: domain Description: DDE_Tnp_IS66 Location: 208288-2085 19 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 208540-208660 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2085 40-208660 bp Feature: gene Location: 208813-210480 bp Feature: RT Description: RVT_N Location: 208867-209110 bp Feature: RT Description: RVT_N Location: 208867-209110 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209155-209803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20915 5 -209803 bp Feature: domain Description: GIIM Note: maturase Location: 209857-210088 bp Feature: domain Description: GIIM Note: maturase Location: 20985 7-210088 bp Feature: gene Location: 210622-210738 bp Feature: gene Location: 210718-210840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3292 (Periplasmic ligand-binding sensor domain ), Y_Y_Y (pfam07495), BaeS (COG0642), PRK15347 (two component system sensor kinase), YesN (COG4753), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)