myRT

myRT report for GCA_000154565.1_ASM15456v1

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Seq: DS544169.1 Anaerotruncus colihominis DSM 17241 Scfld_02_2 genomic scaffold, whole genome shotgun sequence (11876 bp)
Overview 1 RT 1: 6922-10110 bp Neighborhood of RT #1 [6922, 10247] HTH_AsnC-type RVT-Retrons CstA CstA Feature: gene Location: 6922-7218 bp Feature: domain Description: HTH_AsnC-type Location: 6934-7054 bp Feature: domain Description: HTH_AsnC-type Location: 6934-7054 bp Feature: gene Location: 7295-7435 bp Feature: gene Location: 7414-8418 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7627-8161 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7627-81 61 bp Feature: gene Location: 8467-8718 bp Feature: gene Location: 8787-10247 bp Feature: domain Description: CstA Location: 8790-9258 bp Feature: domain Description: CstA Location: 8790-9258 bp Feature: domain Description: CstA Location: 9267-10110 bp Feature: domain Description: CstA Location: 9267-1 01 1 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_AsnC-type (pfam13404), RVT-Retrons, CstA (pfam02554)

Seq: DS544185.1 Anaerotruncus colihominis DSM 17241 Scfld_02_18 genomic scaffold, whole genome shotgun sequence (444417 bp)
Overview 1 RT 1: 420601-421922 bp Neighborhood of RT #1 [420601, 421922] PHA02517 RVT-GII KOG4768 Feature: gene Location: 420601-420849 bp Feature: domain Description: PHA02517 Location: 420607-420826 bp Feature: domain Description: PHA02 517 Location: 42 0607-42 082 6 bp Feature: gene Location: 420850-421032 bp Feature: gene Location: 421091-421753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 421094-421289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 1094-42 12 89 bp Feature: domain Description: KOG4768 Location: 421337-421748 bp Feature: domain Description: KOG4768 Location: 42 1337-42 1748 bp Feature: gene Location: 421655-421825 bp Feature: gene Location: 421785-421922 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase )

Seq: DS544174.1 Anaerotruncus colihominis DSM 17241 Scfld_02_7 genomic scaffold, whole genome shotgun sequence (126081 bp)
Overview 1 RT 1: 58477-63294 bp Neighborhood of RT #1 [58477, 64001] InsE PHA02517 RVT-GII Resolvase Recombinase Zn_ribbon_recom PLN03185 Feature: gene Location: 58477-58749 bp Feature: domain Description: InsE Location: 58486-58741 bp Feature: domain Description: InsE Location: 58486-58741 bp Feature: gene Location: 58875-59639 bp Feature: domain Description: PHA02517 Location: 58926-59580 bp Feature: domain Description: PHA02517 Location: 58926-59580 bp Feature: gene Location: 59802-60806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60564-60669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60564-60669 bp Feature: gene Location: 60849-62768 bp Feature: domain Description: Resolvase Location: 60903-61329 bp Feature: domain Description: Resolvase Location: 60903 -613 29 bp Feature: domain Description: Recombinase Location: 61413-61659 bp Feature: domain Description: Recombinase Location: 61413 -61659 bp Feature: domain Description: Zn_ribbon_recom Location: 61704-61881 bp Feature: domain Description: Zn_ribbon_recom Location: 61704-61881 bp Feature: gene Location: 62784-64001 bp Feature: domain Description: PLN03185 Location: 62901-63294 bp Feature: domain Description: PLN03 185 Location: 62901-63 294 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), PLN03185 (phosphatidylinositol phosphate kinase; Provisional)