myRT

myRT report for GCA_000155105.1_ASM15510v1

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Seq: CH991859.1 Escherichia albertii TW07627 scf_1109867046288 genomic scaffold, whole genome shotgun sequence (4671083 bp)
Overview 1 RT 1: 952411-964513 bp 2 RT 2: 2343302-2348157 bp 3 RT 3: 4421965-4429441 bp Neighborhood of RT #1 [952411, 964569] PRK09183 InsE RVT-GII GIIM InsE HTH_38 Tra8 RVT-GII GIIM DEXXQc_Upf1-like DNA2 PRK09692 Neighborhood of RT #2 [2343302, 2348159] PRK09183 COG4584 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #3 [4421965, 4429530] YprA DDE_Tnp_IS1 RVT-UG5 DDE_Tnp_IS1 nitrilase Feature: gene Location: 952411-952740 bp Ori: EDS89922.1 Feature: domain Description: PRK09183 Location: 952414-952735 bp Feature: domain Description: PRK091 83 Location: 95241 4-952735 bp Feature: gene Location: 952808-953158 bp Ori: EDS89921.1 Feature: domain Description: InsE Location: 952817-953105 bp Feature: domain Description: InsE Location: 95281 7-9531 05 bp Feature: gene Location: 954100-955623 bp Ori: EDS89925.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 954373-955105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 954373-9551 05 bp Feature: domain Description: GIIM Note: maturase Location: 955180-955378 bp Feature: domain Description: GIIM Note: maturase Location: 9551 80-955378 bp Feature: gene Location: 956631-956906 bp Ori: EDS93388.1 Feature: domain Description: InsE Location: 956673-956904 bp Feature: domain Description: InsE Location: 956673-956904 bp Feature: gene Location: 957009-957749 bp Ori: EDS93460.1 Feature: domain Description: HTH_38 Location: 957018-957132 bp Feature: domain Description: HTH_38 Location: 95701 8-9571 32 bp Feature: domain Description: Tra8 Location: 957168-957744 bp Feature: domain Description: Tra8 Location: 9571 68-957744 bp Feature: gene Location: 958897-960420 bp Ori: EDS93342.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 959170-959902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9591 70-959902 bp Feature: domain Description: GIIM Note: maturase Location: 959977-960175 bp Feature: domain Description: GIIM Note: maturase Location: 959977-9601 75 bp Feature: gene Location: 960964-962853 bp Ori: EDS93487.1 Feature: domain Description: DEXXQc_Upf1-like Location: 961789-961999 bp Feature: domain Description: DEXXQc_Upf1 -like Location: 961 789-961 999 bp Feature: domain Description: DNA2 Location: 962263-962794 bp Feature: domain Description: DNA2 Location: 962263-962794 bp Feature: gene Location: 963304-964569 bp Ori: EDS92997.1 Feature: domain Description: PRK09692 Location: 963313-964513 bp Feature: domain Description: PRK09692 Location: 96331 3-96451 3 bp Feature: gene Location: 2343302-2344081 bp Ori: EDS94120.1 Feature: domain Description: PRK09183 Location: 2343308-2344079 bp Feature: domain Description: PRK091 83 Location: 2343308-2344079 bp Feature: gene Location: 2344081-2345103 bp Ori: EDS93985.1 Feature: domain Description: COG4584 Location: 2344084-2344954 bp Feature: domain Description: COG4584 Location: 2344084-2344954 bp Feature: gene Location: 2345291-2346814 bp Ori: EDS93565.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2345564-2346296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2345564-2346296 bp Feature: domain Description: GIIM Note: maturase Location: 2346371-2346569 bp Feature: domain Description: GIIM Note: maturase Location: 2346371 -2346569 bp Feature: gene Location: 2347405-2347884 bp Ori: EDS94211.1 Feature: domain Description: PHA02517 Location: 2347465-2347819 bp Feature: domain Description: PHA0251 7 Location: 2347465-234781 9 bp Feature: gene Location: 2347884-2348159 bp Ori: EDS93795.1 Feature: domain Description: InsE Location: 2347926-2348157 bp Feature: domain Description: InsE Location: 2347926-23481 57 bp Feature: gene Location: 4421965-4424877 bp Ori: EDS90746.1 Feature: domain Description: YprA Location: 4422631-4422868 bp Feature: domain Description: YprA Location: 4422631 -4422868 bp Feature: gene Location: 4425225-4425728 bp Ori: EDS90860.1 Feature: domain Description: DDE_Tnp_IS1 Location: 4425336-4425726 bp Feature: domain Description: DDE_Tnp_IS1 Location: 4425336-4425726 bp Feature: gene Location: 4425751-4427007 bp Ori: EDS90728.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4426069-4426570 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 4426069-4426570 bp Feature: gene Location: 4427230-4427733 bp Ori: EDS90875.1 Feature: domain Description: DDE_Tnp_IS1 Location: 4427341-4427731 bp Feature: domain Description: DDE_Tnp_IS1 Location: 4427341 -4427731 bp Feature: gene Location: 4427836-4429530 bp Ori: EDS90917.1 Feature: domain Description: nitrilase Location: 4428841-4429441 bp Feature: domain Description: nitrilase Location: 4428841 -4429441 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), InsE (COG2963), RVT-GII, GIIM (pfam08388), HTH_38 (pfam13936), Tra8 (COG2826), DEXXQc_Upf1-like (cd17934), DNA2 (COG1112), PRK09692 (Integrase; provisional), COG4584 (Transposase )
PHA02517 (putative transposase OrfB; Reviewed), YprA (COG1205), DDE_Tnp_IS1 (pfam03400), RVT-UG5, nitrilase (cl11424)