myRT

myRT report for GCA_000155435.1_ASM15543v1

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Seq: DS990276.1 Clostridiales bacterium 1_7_47_FAA supercont2.17 genomic scaffold, whole genome shotgun sequence (1254 bp)
Overview 1 RT 1: 81-993 bp Neighborhood of RT #1 [81, 1214] RVT-GII GIIM Feature: gene Location: 81-1214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 111-729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 -729 bp Feature: domain Description: GIIM Note: maturase Location: 783-993 bp Feature: domain Description: GIIM Note: maturase Location: 783-993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: DS990262.1 Clostridiales bacterium 1_7_47_FAA supercont2.3 genomic scaffold, whole genome shotgun sequence (992254 bp)
Overview 1 RT 1: 164179-176681 bp Neighborhood of RT #1 [164179, 176806] TTRAP YtxK COG4646 RVT-GII McrA KOG1000 DUF3848 DUF3849 Feature: gene Location: 164179-164394 bp Feature: domain Description: TTRAP Location: 164191-164380 bp Feature: domain Description: TTRAP Location: 164191-164380 bp Feature: gene Location: 164472-172229 bp Feature: domain Description: YtxK Location: 168519-169137 bp Feature: domain Description: YtxK Location: 168519-169137 bp Feature: domain Description: COG4646 Location: 169206-171786 bp Feature: domain Description: COG4646 Location: 1692 06-171786 bp Feature: gene Location: 172922-174829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 173234-173960 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1732 34-173960 bp Feature: domain Description: McrA Location: 174521-174698 bp Feature: domain Description: McrA Location: 17452 1-174698 bp Feature: gene Location: 174961-175986 bp Feature: domain Description: KOG1000 Location: 174985-175186 bp Feature: domain Description: KOG1000 Location: 174985-175186 bp Feature: gene Location: 175970-176806 bp Feature: domain Description: DUF3848 Location: 176006-176285 bp Feature: domain Description: DUF3848 Location: 176006-1762 85 bp Feature: domain Description: DUF3849 Location: 176321-176681 bp Feature: domain Description: DUF3849 Location: 17632 1-176681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TTRAP (pfam14203), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT-GII, McrA (COG4058), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), DUF3848 (pfam12959), DUF3849 (pfam12960)

Seq: DS990275.1 Clostridiales bacterium 1_7_47_FAA supercont2.16 genomic scaffold, whole genome shotgun sequence (1254 bp)
Overview 1 RT 1: 40-952 bp Neighborhood of RT #1 [40, 1161] RVT-GII GIIM Feature: gene Location: 40-1161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70-685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70-685 bp Feature: domain Description: GIIM Note: maturase Location: 742-952 bp Feature: domain Description: GIIM Note: maturase Location: 742-952 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: DS990261.1 Clostridiales bacterium 1_7_47_FAA supercont2.2 genomic scaffold, whole genome shotgun sequence (1264802 bp)
Overview 1 RT 1: 882508-886439 bp Neighborhood of RT #1 [882508, 886894] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 FlgJ Feature: gene Location: 882508-883602 bp Feature: domain Description: PHA00653 Location: 882601-883600 bp Feature: domain Description: PHA00653 Location: 882601-883600 bp Feature: gene Location: 883662-884051 bp Feature: domain Description: Avd_like Location: 883722-884025 bp Feature: domain Description: Avd_like Location: 883722-884 025 bp Feature: gene Location: 884407-885447 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 884614-885289 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 884 614 -885289 bp Feature: gene Location: 885518-885946 bp Feature: domain Description: Phage_holin_4_1 Location: 885572-885899 bp Feature: domain Description: Phage_holin_4 _1 Location: 885572-885899 bp Feature: gene Location: 885950-886894 bp Feature: domain Description: FlgJ Location: 885968-886439 bp Feature: domain Description: FlgJ Location: 885968-8864 39 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105), FlgJ (COG1705)

Seq: DS990263.1 Clostridiales bacterium 1_7_47_FAA supercont2.4 genomic scaffold, whole genome shotgun sequence (730799 bp)
Overview 1 RT 1: 388087-391321 bp Neighborhood of RT #1 [388087, 391344] RVT-Retrons AIM24 Cons_hypoth95 Feature: gene Location: 388087-388434 bp Feature: gene Location: 388452-388601 bp Feature: gene Location: 388914-389915 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 389085-389634 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 389085 -389634 bp Feature: gene Location: 389971-390648 bp Feature: domain Description: AIM24 Location: 389974-390637 bp Feature: domain Description: AIM24 Location: 389974-390637 bp Feature: gene Location: 390787-391344 bp Feature: domain Description: Cons_hypoth95 Location: 390790-391321 bp Feature: domain Description: Cons_hypoth95 Location: 390790-391321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, AIM24 (pfam01987), Cons_hypoth95 (pfam03602)