myRT

myRT report for GCA_000155555.1_ASM15555v1

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Seq: DS989842.1 Microcoleus chthonoplastes PCC 7420 scf_1103659003831 genomic scaffold, whole genome shotgun sequence (519555 bp)
Overview 1 RT 1: 171635-182554 bp Neighborhood of RT #1 [171635, 182607] SpoVK RVT_N RVT-GII GIIM HNH SpoIIIAA R3H_AAA HycB Fer4_6 LdpA_C Feature: gene Location: 171635-172507 bp Feature: gene Location: 172636-174642 bp Ori: EDX77904.1 Feature: domain Description: SpoVK Location: 173848-174511 bp Feature: domain Description: SpoVK Location: 1 73848-1 7451 1 bp Feature: gene Location: 175781-177556 bp Ori: EDX78287.1 Feature: domain Description: RVT_N Location: 175790-176036 bp Feature: domain Description: RVT_N Location: 1 75790-1 76036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 176078-176759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 76078-1 76759 bp Feature: domain Description: GIIM Note: maturase Location: 176864-177092 bp Feature: domain Description: GIIM Note: maturase Location: 1 76864-1 77092 bp Feature: domain Description: HNH Note: nucleases Location: 177317-177449 bp Feature: domain Description: HNH Note: nucleases Location: 1 7731 7-1 77449 bp Feature: gene Location: 179462-181258 bp Ori: EDX78014.1 Feature: domain Description: SpoIIIAA Location: 179561-180419 bp Feature: domain Description: SpoIIIAA Location: 1 79561 -1 8041 9 bp Feature: domain Description: R3H_AAA Location: 181076-181253 bp Feature: domain Description: R3H_AAA Location: 1 81 076-1 81 253 bp Feature: gene Location: 181369-182607 bp Ori: EDX78193.1 Feature: domain Description: HycB Location: 181483-181750 bp Feature: domain Description: HycB Location: 1 81 483-1 81 750 bp Feature: domain Description: Fer4_6 Location: 181840-181900 bp Feature: domain Description: Fer4_6 Location: 1 81 840-1 81 900 bp Feature: domain Description: LdpA_C Location: 181945-182554 bp Feature: domain Description: LdpA_C Location: 1 81 945-1 82554 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpoVK (COG0464), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), SpoIIIAA (COG3854), R3H_AAA (cd02645), HycB (COG1142), Fer4_6 (pfam12837), LdpA_C (pfam12617)

Seq: DS989841.1 Microcoleus chthonoplastes PCC 7420 scf_1103659003829 genomic scaffold, whole genome shotgun sequence (523263 bp)
Overview 1 RT 1: 195779-200690 bp Neighborhood of RT #1 [195779, 200690] Y1_Tnp RVT_N RVT-GII GIIM HNH InsQ Feature: gene Location: 195779-195916 bp Feature: gene Location: 196183-196497 bp Ori: EDX78461.1 Feature: domain Description: Y1_Tnp Location: 196189-196480 bp Feature: domain Description: Y1_Tnp Location: 196189-196480 bp Feature: gene Location: 197451-199226 bp Ori: EDX78426.1 Feature: domain Description: RVT_N Location: 197460-197706 bp Feature: domain Description: RVT_N Location: 197460-197706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197748-198429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 197748-19842 9 bp Feature: domain Description: GIIM Note: maturase Location: 198534-198762 bp Feature: domain Description: GIIM Note: maturase Location: 198534-198762 bp Feature: domain Description: HNH Note: nucleases Location: 198987-199119 bp Feature: domain Description: HNH Note: nucleases Location: 198987-199119 bp Feature: gene Location: 199219-200481 bp Ori: EDX78478.1 Feature: domain Description: InsQ Location: 199339-200332 bp Feature: domain Description: InsQ Location: 199339-2 00332 bp Feature: gene Location: 200535-200690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Y1_Tnp (pfam01797), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), InsQ (COG0675)

Seq: DS989860.1 Microcoleus chthonoplastes PCC 7420 scf_1103659003805 genomic scaffold, whole genome shotgun sequence (177565 bp)
Overview 1 RT 1: 42883-47525 bp Neighborhood of RT #1 [42883, 47527] HcaE PRK11815 RVT-UG17 SLATT_5 DUF4926 Feature: gene Location: 42883-43944 bp Ori: EDX72993.1 Feature: domain Description: HcaE Location: 42955-43468 bp Feature: domain Description: HcaE Location: 42955-43 468 bp Feature: gene Location: 44086-45102 bp Ori: EDX73038.1 Feature: domain Description: PRK11815 Location: 44140-45091 bp Feature: domain Description: PRK11815 Location: 44140-45091 bp Feature: gene Location: 45186-46538 bp Ori: EDX73052.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 45369-45987 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 453 69-45987 bp Feature: gene Location: 46683-47360 bp Ori: EDX73008.1 Feature: domain Description: SLATT_5 Location: 46767-47346 bp Feature: domain Description: SLATT_5 Location: 46767-473 46 bp Feature: gene Location: 47405-47527 bp Ori: EDX72979.1 Feature: domain Description: DUF4926 Location: 47423-47525 bp Feature: domain Description: DUF4926 Location: 47423 -47525 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HcaE (COG4638), PRK11815 (tRNA dihydrouridine(20/20a) synthase DusA), RVT-UG17, SLATT_5 (pfam18160), DUF4926 (pfam16277)

Seq: DS989855.1 Microcoleus chthonoplastes PCC 7420 scf_1103659003821 genomic scaffold, whole genome shotgun sequence (248733 bp)
Overview 1 RT 1: 205394-211713 bp Neighborhood of RT #1 [205394, 212012] SUL1 KefB group_II_RT_mat RVT-UG13 MhpC MhpC Feature: gene Location: 205394-207142 bp Ori: EDX73958.1 Feature: domain Description: SUL1 Location: 205412-207050 bp Feature: domain Description: SUL1 Location: 2054 12-207050 bp Feature: gene Location: 207500-208897 bp Ori: EDX73981.1 Feature: domain Description: KefB Location: 207590-208850 bp Feature: domain Description: KefB Location: 207590-208850 bp Feature: gene Location: 209123-210355 bp Ori: EDX73939.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 209195-209459 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 209195-2094 59 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 209540-210008 bp Feature: RT Description: RVT-UG13 Note: UG13 RT Location: 20954 0-210008 bp Feature: gene Location: 210355-211068 bp Feature: gene Location: 211107-212012 bp Ori: EDX73938.1 Feature: domain Description: MhpC Location: 211302-211458 bp Feature: domain Description: MhpC Location: 211302-2114 58 bp Feature: domain Description: MhpC Location: 211536-211713 bp Feature: domain Description: MhpC Location: 211536-211713 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SUL1 (COG0659), KefB (COG0475), group_II_RT_mat (TIGR04416), RVT-UG13, MhpC (COG0596)

Seq: DS989867.1 Microcoleus chthonoplastes PCC 7420 scf_1103659003830 genomic scaffold, whole genome shotgun sequence (131471 bp)
Overview 1 RT 1: 102959-113222 bp Neighborhood of RT #1 [102959, 113233] PBP2_phosphate_like_1 COG3330 COG3330 COG3330 PANDER_like PANDER_like FG-GAP_2 FG-GAP_2 FG-GAP_2 FG-GAP_2 FG-GAP_2 FG-GAP_2 FG-GAP_2 RVT_N RVT-GII GIIM HNH InsQ CypX Feature: gene Location: 102959-105541 bp Ori: EDX72058.1 Feature: domain Description: PBP2_phosphate_like_1 Location: 103130-103841 bp Feature: domain Description: PBP2_phosphate_like_1 Location: 103130-103841 bp Feature: domain Description: COG3330 Location: 104252-104573 bp Feature: domain Description: COG3330 Location: 10425 2-1045 73 bp Feature: domain Description: COG3330 Location: 104708-105020 bp Feature: domain Description: COG3330 Location: 104708-105 020 bp Feature: domain Description: COG3330 Location: 105113-105509 bp Feature: domain Description: COG3330 Location: 105 113-105 5 09 bp Feature: gene Location: 105726-107810 bp Ori: EDX72138.1 Feature: domain Description: PANDER_like Location: 105753-106134 bp Feature: domain Description: PANDER_like Location: 105 75 3-106134 bp Feature: domain Description: PANDER_like Location: 106287-106620 bp Feature: domain Description: PANDER_like Location: 106287-106620 bp Feature: domain Description: FG-GAP_2 Location: 106662-106809 bp Feature: domain Description: FG-GAP_2 Location: 106662-106809 bp Feature: domain Description: FG-GAP_2 Location: 106830-106977 bp Feature: domain Description: FG-GAP_2 Location: 106830-106977 bp Feature: domain Description: FG-GAP_2 Location: 106998-107145 bp Feature: domain Description: FG-GAP_2 Location: 106998-107145 bp Feature: domain Description: FG-GAP_2 Location: 107166-107313 bp Feature: domain Description: FG-GAP_2 Location: 107166-107313 bp Feature: domain Description: FG-GAP_2 Location: 107334-107481 bp Feature: domain Description: FG-GAP_2 Location: 107334-107481 bp Feature: domain Description: FG-GAP_2 Location: 107502-107625 bp Feature: domain Description: FG-GAP_2 Location: 1075 02-107625 bp Feature: domain Description: FG-GAP_2 Location: 107646-107790 bp Feature: domain Description: FG-GAP_2 Location: 107646-107790 bp Feature: gene Location: 108752-110527 bp Ori: EDX72066.1 Feature: domain Description: RVT_N Location: 108761-109007 bp Feature: domain Description: RVT_N Location: 108761-109007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109049-109730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 109049-109730 bp Feature: domain Description: GIIM Note: maturase Location: 109835-110063 bp Feature: domain Description: GIIM Note: maturase Location: 109835 -110063 bp Feature: domain Description: HNH Note: nucleases Location: 110288-110420 bp Feature: domain Description: HNH Note: nucleases Location: 110288-110420 bp Feature: gene Location: 110580-111719 bp Ori: EDX72082.1 Feature: domain Description: InsQ Location: 110643-111588 bp Feature: domain Description: InsQ Location: 110643-1115 88 bp Feature: gene Location: 111905-113233 bp Ori: EDX72135.1 Feature: domain Description: CypX Location: 111938-113222 bp Feature: domain Description: CypX Location: 111938-113222 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_phosphate_like_1 (cd13653), COG3330 (Uncharacterized conserved protein ), PANDER_like (cl19122), FG-GAP_2 (pfam14312), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), InsQ (COG0675), CypX (COG2124)