myRT

myRT report for GCA_000155595.1_ASM15559v1

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Seq: DS989908.1 Synechococcus sp. PCC 7335 scf_1103496006891 genomic scaffold, whole genome shotgun sequence (60981 bp)
Overview 1 RT 1: 41957-45181 bp Neighborhood of RT #1 [41957, 45181] YrhK YrhK RVT_N RVT-GII GIIM HNHc DUF4440 Feature: gene Location: 41957-42196 bp Feature: domain Description: YrhK Location: 42038-42098 bp Feature: domain Description: YrhK Location: 42038-42098 bp Feature: domain Description: YrhK Location: 42113-42173 bp Feature: domain Description: YrhK Location: 421 1 3-421 73 bp Feature: gene Location: 42820-43032 bp Feature: RT Description: RVT_N Location: 42871-43030 bp Feature: RT Description: RVT_N Location: 42871 -43030 bp Feature: gene Location: 43072-44511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43165-43804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 65-43804 bp Feature: domain Description: GIIM Note: maturase Location: 43879-44113 bp Feature: domain Description: GIIM Note: maturase Location: 43879-441 1 3 bp Feature: domain Description: HNHc Note: nucleases Location: 44311-44476 bp Feature: domain Description: HNHc Note: nucleases Location: 4431 1 -44476 bp Feature: gene Location: 44615-44986 bp Feature: domain Description: DUF4440 Location: 44651-44957 bp Feature: domain Description: DUF4440 Location: 44651 -44957 bp Feature: gene Location: 45026-45181 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YrhK (pfam14145), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF4440 (pfam14534)

Seq: DS989905.1 Synechococcus sp. PCC 7335 scf_1103496006893 genomic scaffold, whole genome shotgun sequence (774507 bp)
Overview 1 RT 1: 642023-646625 bp 2 RT 2: 662248-671325 bp Neighborhood of RT #1 [642023, 646625] RVT_N RVT-GII GIIM HNHc DUF4158 Neighborhood of RT #2 [662248, 671325] Rve Rve RVT_N RVT-GII NB-ARC WD40 WD40 Feature: gene Location: 642023-642154 bp Feature: gene Location: 642361-642519 bp Feature: gene Location: 643031-644896 bp Feature: RT Description: RVT_N Location: 643184-643430 bp Feature: RT Description: RVT_N Location: 643184-643430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643478-644153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 643478-644153 bp Feature: domain Description: GIIM Note: maturase Location: 644213-644441 bp Feature: domain Description: GIIM Note: maturase Location: 6442 13-644441 bp Feature: domain Description: HNHc Note: nucleases Location: 644663-644825 bp Feature: domain Description: HNHc Note: nucleases Location: 644663-64482 5 bp Feature: gene Location: 645033-646439 bp Feature: domain Description: DUF4158 Location: 645042-645507 bp Feature: domain Description: DUF4158 Location: 645042 -645507 bp Feature: gene Location: 646458-646625 bp Feature: gene Location: 662248-662679 bp Feature: domain Description: Rve Location: 662251-662647 bp Feature: domain Description: Rve Location: 662 2 51-662 647 bp Feature: gene Location: 662657-663400 bp Feature: domain Description: Rve Location: 662717-663218 bp Feature: domain Description: Rve Location: 662 717-6632 18 bp Feature: gene Location: 663394-664317 bp Feature: RT Description: RVT_N Location: 663412-663658 bp Feature: RT Description: RVT_N Location: 663412 -663658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 663700-664279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 663700-6642 79 bp Feature: gene Location: 665037-668582 bp Feature: domain Description: NB-ARC Location: 665430-666024 bp Feature: domain Description: NB-ARC Location: 665430-66602 4 bp Feature: domain Description: WD40 Location: 666711-667554 bp Feature: domain Description: WD40 Location: 666711-667554 bp Feature: domain Description: WD40 Location: 667575-668439 bp Feature: domain Description: WD40 Location: 667575-668439 bp Feature: gene Location: 669862-671325 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF4158 (pfam13700), Rve (COG3316), NB-ARC (pfam00931), WD40 (smart00320)

Seq: DS989906.1 Synechococcus sp. PCC 7335 scf_1103496006896 genomic scaffold, whole genome shotgun sequence (216845 bp)
Overview 1 RT 1: 16504-27949 bp 2 RT 2: 58606-69480 bp 3 RT 3: 191104-196109 bp Neighborhood of RT #1 [16504, 28062] NucS RVT_N RVT-GII GIIM HNHc DUF4158 DDE_Tnp_Tn3 RVT_N RVT-GII GIIM HNHc umuC DDE_Tnp_IS66 Neighborhood of RT #2 [58606, 69869] YkuD_like Crystall RVT_N RVT-GII YkfC HNHc PRK08181 RVT_N RVT-GII GIIM HNHc HTH_31 rve Ntn_CGH_like Neighborhood of RT #3 [191104, 196945] Spo0J BcsQ RVT-GII Rve KOG3714 Feature: gene Location: 16504-16629 bp Feature: gene Location: 16761-17816 bp Feature: domain Description: NucS Location: 16821-17637 bp Feature: domain Description: NucS Location: 16821-1763 7 bp Feature: gene Location: 18336-20201 bp Feature: RT Description: RVT_N Location: 18489-18735 bp Feature: RT Description: RVT_N Location: 18489-1873 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18783-19458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18783 -19458 bp Feature: domain Description: GIIM Note: maturase Location: 19518-19746 bp Feature: domain Description: GIIM Note: maturase Location: 19518-19746 bp Feature: domain Description: HNHc Note: nucleases Location: 19968-20130 bp Feature: domain Description: HNHc Note: nucleases Location: 19968-2013 0 bp Feature: gene Location: 20338-23316 bp Feature: domain Description: DUF4158 Location: 20347-20812 bp Feature: domain Description: DUF4158 Location: 203 47-20812 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 22087-23254 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 22087-23 254 bp Feature: gene Location: 23641-25506 bp Feature: RT Description: RVT_N Location: 23794-24040 bp Feature: RT Description: RVT_N Location: 23 794-24040 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24088-24763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24088-24763 bp Feature: domain Description: GIIM Note: maturase Location: 24823-25051 bp Feature: domain Description: GIIM Note: maturase Location: 24823 -25051 bp Feature: domain Description: HNHc Note: nucleases Location: 25273-25435 bp Feature: domain Description: HNHc Note: nucleases Location: 25273 -2543 5 bp Feature: gene Location: 26372-26551 bp Feature: domain Description: umuC Location: 26375-26519 bp Feature: domain Description: umuC Location: 263 75-26519 bp Feature: gene Location: 26701-28062 bp Feature: domain Description: DDE_Tnp_IS66 Location: 27169-27949 bp Feature: domain Description: DDE_Tnp_IS66 Location: 27169-27949 bp Feature: gene Location: 58606-58962 bp Feature: domain Description: YkuD_like Location: 58738-58945 bp Feature: domain Description: YkuD_like Location: 5873 8-58945 bp Feature: gene Location: 59322-59561 bp Feature: domain Description: Crystall Location: 59340-59511 bp Feature: domain Description: Crystall Location: 593 40-59511 bp Feature: gene Location: 59727-61487 bp Feature: RT Description: RVT_N Location: 59763-60009 bp Feature: RT Description: RVT_N Location: 59763 -60009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60051-60690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60051-60690 bp Feature: domain Description: YkfC Location: 60849-61032 bp Feature: domain Description: YkfC Location: 60849-6103 2 bp Feature: domain Description: HNHc Note: nucleases Location: 61215-61359 bp Feature: domain Description: HNHc Note: nucleases Location: 61215-613 59 bp Feature: gene Location: 61833-61952 bp Feature: gene Location: 62537-63826 bp Feature: gene Location: 63958-64482 bp Feature: domain Description: PRK08181 Location: 63961-64447 bp Feature: domain Description: PRK08181 Location: 63 961-64447 bp Feature: gene Location: 64466-65569 bp Feature: gene Location: 65664-67382 bp Feature: RT Description: RVT_N Location: 65697-65943 bp Feature: RT Description: RVT_N Location: 65697-65943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65985-66639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65985-6663 9 bp Feature: domain Description: GIIM Note: maturase Location: 66747-66969 bp Feature: domain Description: GIIM Note: maturase Location: 66747-66969 bp Feature: domain Description: HNHc Note: nucleases Location: 67143-67308 bp Feature: domain Description: HNHc Note: nucleases Location: 67143 -673 08 bp Feature: gene Location: 68020-68937 bp Feature: domain Description: HTH_31 Location: 68152-68248 bp Feature: domain Description: HTH_3 1 Location: 68152-68248 bp Feature: domain Description: rve Location: 68644-68911 bp Feature: domain Description: rve Location: 68644-68911 bp Feature: gene Location: 69045-69869 bp Feature: domain Description: Ntn_CGH_like Location: 69075-69480 bp Feature: domain Description: Ntn_CGH_like Location: 69075-69480 bp Feature: gene Location: 191104-192213 bp Feature: domain Description: Spo0J Location: 191284-192052 bp Feature: domain Description: Spo0J Location: 191284-192052 bp Feature: gene Location: 192206-193009 bp Feature: domain Description: BcsQ Location: 192224-192980 bp Feature: domain Description: BcsQ Location: 192224-192980 bp Feature: gene Location: 193297-193719 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193306-193630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 193 3 06-193 63 0 bp Feature: gene Location: 194109-194822 bp Feature: domain Description: Rve Location: 194139-194748 bp Feature: domain Description: Rve Location: 19413 9-194748 bp Feature: gene Location: 194783-196945 bp Feature: domain Description: KOG3714 Location: 195539-196109 bp Feature: domain Description: KOG3 714 Location: 19553 9-196109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NucS (pfam01939), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), umuC (PRK03609), DDE_Tnp_IS66 (pfam03050), YkuD_like (cl21614)
Crystall (pfam00030), YkfC (COG3344), PRK08181 (transposase; Validated), HTH_31 (pfam13560), rve (pfam00665), Ntn_CGH_like (cd01935), Spo0J (COG1475), BcsQ (COG1192), Rve (COG3316), KOG3714 (KOG3714, Meprin A metalloprotease )