myRT

myRT report for GCA_000155975.1_ASM15597v1

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Seq: GG730300.1 Citrobacter youngae ATCC 29220 genomic scaffold Scfld1, whole genome shotgun sequence (814885 bp)
Overview 1 RT 1: 256116-262177 bp 2 RT 2: 462439-469422 bp Neighborhood of RT #1 [256116, 262194] groEL RVT_N RVT-GII GIIM HNHc DUF4156 YjeJ Neighborhood of RT #2 [462439, 469422] PRK09945 AIDA autotrans_barl RVT-Retrons AAA_15 Feature: gene Location: 256116-257762 bp Feature: domain Description: groEL Location: 256122-257748 bp Feature: domain Description: groEL Location: 2561 22-257748 bp Feature: gene Location: 257825-257974 bp Feature: gene Location: 258757-260547 bp Feature: RT Description: RVT_N Location: 258913-259147 bp Feature: RT Description: RVT_N Location: 25891 3-2591 47 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259201-259846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259201 -259846 bp Feature: domain Description: GIIM Note: maturase Location: 259900-260131 bp Feature: domain Description: GIIM Note: maturase Location: 259900-2601 31 bp Feature: domain Description: HNHc Note: nucleases Location: 260341-260497 bp Feature: domain Description: HNHc Note: nucleases Location: 260341 -260497 bp Feature: gene Location: 260878-261243 bp Feature: domain Description: DUF4156 Location: 260959-261235 bp Feature: domain Description: DUF41 56 Location: 260959-261 235 bp Feature: gene Location: 261331-262194 bp Feature: domain Description: YjeJ Location: 261334-262177 bp Feature: domain Description: YjeJ Location: 261 334-2621 77 bp Feature: gene Location: 462439-463032 bp Feature: gene Location: 463140-465452 bp Feature: domain Description: PRK09945 Location: 463332-463629 bp Feature: domain Description: PRK09945 Location: 463332-463629 bp Feature: domain Description: AIDA Location: 463689-463785 bp Feature: domain Description: AIDA Location: 463689-463785 bp Feature: domain Description: autotrans_barl Location: 464235-465450 bp Feature: domain Description: autotrans_barl Location: 464235-465450 bp Feature: gene Location: 465731-466834 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 465878-466433 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 465878-466433 bp Feature: gene Location: 467007-469127 bp Feature: domain Description: AAA_15 Location: 467010-467991 bp Feature: domain Description: AAA_1 5 Location: 46701 0-467991 bp Feature: gene Location: 469303-469422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF4156 (pfam13698), YjeJ (pfam15922), PRK09945 (hypothetical protein; Provisional), AIDA (pfam16168), autotrans_barl (TIGR01414)
RVT-Retrons, AAA_15 (pfam13175)