myRT

myRT report for GCA_000156195.1_ASM15619v1

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Seq: GG688338.1 Bacteroides finegoldii DSM 17565 genomic scaffold Scfld21, whole genome shotgun sequence (47314 bp)
Overview 1 RT 1: 37016-41764 bp Neighborhood of RT #1 [37016, 41784] RVT-Retrons VapI Feature: gene Location: 37016-38590 bp Feature: gene Location: 39301-39513 bp Feature: gene Location: 39575-40210 bp Ori: EEX43302.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39731-40175 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39731 -401 75 bp Feature: gene Location: 40408-40542 bp Feature: gene Location: 41440-41784 bp Ori: EEX43304.1 Gene: higA Feature: domain Description: VapI Location: 41497-41764 bp Feature: domain Description: VapI Location: 41 497-41 764 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, VapI (COG3093)

Seq: GG688320.1 Bacteroides finegoldii DSM 17565 genomic scaffold Scfld3, whole genome shotgun sequence (322719 bp)
Overview 1 RT 1: 13719-19041 bp Neighborhood of RT #1 [13719, 23162] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 13719-13961 bp Feature: gene Location: 14141-14626 bp Feature: gene Location: 14623-15294 bp Ori: EEX46140.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 14626-14878 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1462 6-14878 bp Feature: gene Location: 15286-16242 bp Feature: gene Location: 16443-23162 bp Ori: EEX46141.1 Feature: domain Description: Laminin_G_3 Location: 17886-17964 bp Feature: domain Description: Laminin_G_3 Location: 17886-17964 bp Feature: domain Description: Laminin_G_3 Location: 18615-19041 bp Feature: domain Description: Laminin_G_3 Location: 18615-19041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)

Seq: GG688333.1 Bacteroides finegoldii DSM 17565 genomic scaffold Scfld16, whole genome shotgun sequence (116387 bp)
Overview 1 RT 1: 84754-98767 bp Neighborhood of RT #1 [84754, 98883] GlnA3 RVT-Retrons DUF4011 DEXXQc_SF1 KOG1803 MTES_1575 DUF3320 rpsA Feature: gene Location: 84754-86943 bp Ori: EEX43685.1 Gene: glnA Feature: domain Description: GlnA3 Location: 84826-86941 bp Feature: domain Description: GlnA3 Location: 84826-86941 bp Feature: gene Location: 87482-89689 bp Feature: gene Location: 89895-91025 bp Ori: EEX43687.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90216-90759 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 90216-90759 bp Feature: gene Location: 91027-96984 bp Ori: EEX43688.1 Feature: domain Description: DUF4011 Location: 92257-92770 bp Feature: domain Description: DUF4011 Location: 92257-92770 bp Feature: domain Description: DEXXQc_SF1 Location: 93109-95296 bp Feature: domain Description: DEXXQc_SF1 Location: 93 109-95296 bp Feature: domain Description: KOG1803 Location: 95431-95812 bp Feature: domain Description: KOG1803 Location: 9543 1-95812 bp Feature: domain Description: MTES_1575 Location: 95968-96253 bp Feature: domain Description: MTES_1575 Location: 95968-96253 bp Feature: domain Description: DUF3320 Location: 96493-96634 bp Feature: domain Description: DUF3 3 20 Location: 96493 -9663 4 bp Feature: gene Location: 97081-98883 bp Ori: EEX43689.1 Feature: domain Description: rpsA Location: 97150-98767 bp Feature: domain Description: rpsA Location: 97150-98767 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: GG688318.1 Bacteroides finegoldii DSM 17565 genomic scaffold Scfld1, whole genome shotgun sequence (400954 bp)
Overview 1 RT 1: 48257-52217 bp 2 RT 2: 67500-72903 bp Neighborhood of RT #1 [48257, 52217] KOG1378 RVT-GII RVT-GII GIIM Neighborhood of RT #2 [67500, 72903] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Feature: gene Location: 48257-49453 bp Ori: EEX46979.1 Feature: domain Description: KOG1378 Location: 48395-49307 bp Feature: domain Description: KOG1378 Location: 4 8395-4 9307 bp Feature: gene Location: 49472-49609 bp Feature: gene Location: 50338-50826 bp Ori: EEX46981.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50674-50812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50674 -50812 bp Feature: gene Location: 51000-51692 bp Ori: EEX46982.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51012-51252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51012-51252 bp Feature: domain Description: GIIM Note: maturase Location: 51264-51495 bp Feature: domain Description: GIIM Note: maturase Location: 51264 -514 95 bp Feature: gene Location: 51618-51875 bp Feature: gene Location: 52011-52217 bp Feature: gene Location: 67500-68060 bp Feature: gene Location: 68127-69215 bp Ori: EEX47010.1 Feature: domain Description: Bac_Flav_CT_G Location: 68145-68646 bp Feature: domain Description: Bac_Flav_CT_G Location: 6814 5-6864 6 bp Feature: domain Description: Bac_Flav_CT_G Location: 68772-69201 bp Feature: domain Description: Bac_Flav_CT_G Location: 68772-69201 bp Feature: gene Location: 69762-71573 bp Ori: EEX47011.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70026-70848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70026-7084 8 bp Feature: domain Description: Intron_maturas2 Location: 70923-71238 bp Feature: domain Description: Intron_maturas2 Location: 70923-71238 bp Feature: domain Description: HNHc Note: nucleases Location: 71394-71544 bp Feature: domain Description: HNHc Note: nucleases Location: 71394 -7154 4 bp Feature: gene Location: 71651-72178 bp Ori: EEX47012.1 Feature: domain Description: Bac_Flav_CT_G Location: 71669-72086 bp Feature: domain Description: Bac_Flav_CT_G Location: 71669-72086 bp Feature: gene Location: 72166-72903 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1378 (KOG1378, Purple acid phosphatase ), RVT-GII, GIIM (pfam08388), Bac_Flav_CT_G (TIGR03783), Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: GG688321.1 Bacteroides finegoldii DSM 17565 genomic scaffold Scfld4, whole genome shotgun sequence (307259 bp)
Overview 1 RT 1: 134796-144297 bp Neighborhood of RT #1 [134796, 144297] RVT-DGRs Feature: gene Location: 134796-141347 bp Feature: gene Location: 141477-141710 bp Feature: gene Location: 142086-143387 bp Ori: EEX46069.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 142296-142974 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 142296-142974 bp Feature: gene Location: 143384-143869 bp Feature: gene Location: 144055-144297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs