myRT

myRT report for GCA_000156535.1_ASM15653v1

Download annotations/find similar RTs

Seq: GG692719.1 Roseburia intestinalis L1-82 genomic scaffold Scfld6, whole genome shotgun sequence (161194 bp)
Overview 1 RT 1: 149074-157638 bp Neighborhood of RT #1 [149074, 157706] COG4286 Tar RVT-GII TIGR02679 TIGR02680 Feature: gene Location: 149074-150309 bp Ori: EEV01430.1 Feature: domain Description: COG4286 Location: 149119-149944 bp Feature: domain Description: COG4286 Location: 1 491 1 9-1 49944 bp Feature: gene Location: 150354-152081 bp Ori: EEV01431.1 Feature: domain Description: Tar Location: 150801-152079 bp Feature: domain Description: Tar Location: 1 50801 -1 52079 bp Feature: gene Location: 152068-152301 bp Ori: EEV01432.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152131-152275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 521 31 -1 52275 bp Feature: gene Location: 152333-153613 bp Ori: EEV01433.1 Feature: domain Description: TIGR02679 Location: 152450-153590 bp Feature: domain Description: TIGR02679 Location: 1 52450-1 53590 bp Feature: gene Location: 153591-157706 bp Ori: EEV01434.1 Feature: domain Description: TIGR02680 Location: 153609-157638 bp Feature: domain Description: TIGR02680 Location: 1 53609-1 57638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4286 (Uncharacterized protein, UPF0160 family ), Tar (COG0840), RVT-GII, TIGR02679 (TIGR02679 family protein), TIGR02680 (TIGR02680 family protein)

Seq: GG692758.1 Roseburia intestinalis L1-82 genomic scaffold Scfld45, whole genome shotgun sequence (23521 bp)
Overview 1 RT 1: 8407-10946 bp Neighborhood of RT #1 [8407, 10946] RVT-GII group_II_RT_mat Feature: gene Location: 8407-8544 bp Feature: gene Location: 8641-9043 bp Feature: gene Location: 9144-9477 bp Ori: EEU98862.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9147-9477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9147-9477 bp Feature: gene Location: 9998-10176 bp Ori: EEU98843.1 Feature: domain Description: group_II_RT_mat Note: maturase Location: 10076-10166 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 10076-10166 bp Feature: gene Location: 10560-10946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416)

Seq: GG692729.1 Roseburia intestinalis L1-82 genomic scaffold Scfld16, whole genome shotgun sequence (88813 bp)
Overview 1 RT 1: 31526-38070 bp Neighborhood of RT #1 [31526, 38102] MobL RVT-GII GIIM RHOD PRK10696 murE Feature: gene Location: 31526-33007 bp Ori: EEV00212.1 Feature: domain Description: MobL Location: 31529-32687 bp Feature: domain Description: MobL Location: 3 1529-3 2687 bp Feature: gene Location: 33018-33371 bp Feature: gene Location: 33413-34732 bp Ori: EEV00214.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33659-34274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 659-3 4274 bp Feature: domain Description: GIIM Note: maturase Location: 34340-34559 bp Feature: domain Description: GIIM Note: maturase Location: 3 43 40-3 4559 bp Feature: gene Location: 35307-36554 bp Ori: EEV00215.1 Feature: domain Description: RHOD Location: 35427-35679 bp Feature: domain Description: RHOD Location: 3 5427-3 5679 bp Feature: domain Description: PRK10696 Location: 35760-36495 bp Feature: domain Description: PRK10696 Location: 3 5760-3 6495 bp Feature: gene Location: 36582-38102 bp Ori: EEV00216.1 Gene: murE Feature: domain Description: murE Location: 36621-38070 bp Feature: domain Description: murE Location: 3 6621-3 8070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MobL (pfam18555), RVT-GII, GIIM (pfam08388), RHOD (smart00450), PRK10696 (tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional), murE (TIGR01085)

Seq: GG692764.1 Roseburia intestinalis L1-82 genomic scaffold Scfld51, whole genome shotgun sequence (19453 bp)
Overview 1 RT 1: 317-3813 bp Neighborhood of RT #1 [317, 3932] RVT-GII GIIM MFS_MefA_like DUF1848 Feature: gene Location: 317-1636 bp Ori: EEU98685.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-1178 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 563-1178 bp Feature: domain Description: GIIM Note: maturase Location: 1238-1454 bp Feature: domain Description: GIIM Note: maturase Location: 1238-14 54 bp Feature: gene Location: 1878-2942 bp Ori: EEU98686.1 Feature: domain Description: MFS_MefA_like Location: 1881-2919 bp Feature: domain Description: MFS_MefA_like Location: 1881-2919 bp Feature: gene Location: 3087-3932 bp Ori: EEU98687.1 Feature: domain Description: DUF1848 Location: 3090-3813 bp Feature: domain Description: DUF184 8 Location: 3090-3813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), MFS_MefA_like (cd06173), DUF1848 (pfam08902)

Seq: GG692714.1 Roseburia intestinalis L1-82 genomic scaffold Scfld1, whole genome shotgun sequence (254337 bp)
Overview 1 RT 1: 43570-46024 bp Neighborhood of RT #1 [43570, 46024] Avd_like RVT-DGRs Feature: gene Location: 43570-43980 bp Ori: EEV02710.1 Feature: domain Description: Avd_like Location: 43636-43960 bp Feature: domain Description: Avd_like Location: 43636-43960 bp Feature: gene Location: 44371-44589 bp Feature: gene Location: 44690-45613 bp Ori: EEV02703.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 44753-45353 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4475 3-45 35 3 bp Feature: gene Location: 45610-45831 bp Feature: gene Location: 45824-46024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs