myRT

myRT report for GCA_000156675.1_ASM15667v1

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Seq: GG698590.1 Blautia hansenii DSM 20583 genomic scaffold Scfld2, whole genome shotgun sequence (703290 bp)
Overview 1 RT 1: 225605-231368 bp Neighborhood of RT #1 [225605, 231373] PerM TatD_DNAse RVT-Retrons AcrR PRK05402 Feature: gene Location: 225605-226744 bp Ori: EEX21298.1 Feature: domain Description: PerM Location: 225671-226724 bp Feature: domain Description: PerM Location: 225671 -226724 bp Feature: gene Location: 226734-227498 bp Ori: EEX21299.1 Feature: domain Description: TatD_DNAse Location: 226740-227493 bp Feature: domain Description: TatD_DNAse Location: 226740-227493 bp Feature: gene Location: 227582-228550 bp Ori: EEX21300.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 227744-228302 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 227744-228302 bp Feature: gene Location: 228875-229453 bp Ori: EEX21301.1 Feature: domain Description: AcrR Location: 228884-229274 bp Feature: domain Description: AcrR Location: 228884-229274 bp Feature: gene Location: 229469-231373 bp Ori: EEX21302.1 Gene: glgB Feature: domain Description: PRK05402 Location: 229487-231368 bp Feature: domain Description: PRK05402 Location: 229487-231 368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PerM (COG0628), TatD_DNAse (cd01310), RVT-Retrons, AcrR (COG1309), PRK05402 (1,4-alpha-glucan branching protein GlgB)

Seq: GG698592.1 Blautia hansenii DSM 20583 genomic scaffold Scfld4, whole genome shotgun sequence (103933 bp)
Overview 1 RT 1: 55726-59340 bp Neighborhood of RT #1 [55726, 59342] Phage_holin_4_1 RVT-DGRs RVT-DGRs Avd_like PHA00653 Feature: gene Location: 55726-56214 bp Ori: EEX20141.1 Feature: domain Description: Phage_holin_4_1 Location: 55765-56125 bp Feature: domain Description: Phage_holin_4_1 Location: 55765-5612 5 bp Feature: gene Location: 56211-56390 bp Feature: gene Location: 56415-56900 bp Ori: EEX20143.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 56424-56697 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5642 4-56697 bp Feature: gene Location: 57075-57476 bp Ori: EEX20144.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 57315-57471 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 57315-57471 bp Feature: gene Location: 57803-58159 bp Ori: EEX20145.1 Feature: domain Description: Avd_like Location: 57833-58136 bp Feature: domain Description: Avd_like Location: 57833-58136 bp Feature: gene Location: 58200-59342 bp Ori: EEX20146.1 Feature: domain Description: PHA00653 Location: 58323-59340 bp Feature: domain Description: PHA00653 Location: 5832 3-59340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_4_1 (pfam05105), RVT-DGRs, Avd_like (cd16376), PHA00653 (mtd;major tropism determinant)

Seq: GG698588.1 Blautia hansenii DSM 20583 genomic scaffold Scfld0, whole genome shotgun sequence (890578 bp)
Overview 1 RT 1: 219109-222923 bp 2 RT 2: 877830-882774 bp Neighborhood of RT #1 [219109, 222923] pfam03781 Avd_like RVT-DGRs Phytochelatin_C Neighborhood of RT #2 [877830, 882785] Ga5DH-like_SDR_c HNHc RVT-GII rpsA FadR Feature: gene Location: 219109-220206 bp Ori: EEX22970.1 Feature: domain Description: pfam03781 Location: 219349-219667 bp Feature: domain Description: pfam03 781 Location: 2193 49-219667 bp Feature: gene Location: 220278-220622 bp Ori: EEX22971.1 Feature: domain Description: Avd_like Location: 220302-220614 bp Feature: domain Description: Avd_like Location: 2203 02-220614 bp Feature: gene Location: 220882-222195 bp Ori: EEX22972.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 221263-221929 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 221263 -221929 bp Feature: gene Location: 222174-222530 bp Ori: EEX22973.1 Feature: domain Description: Phytochelatin_C Location: 222189-222369 bp Feature: domain Description: Phytochelatin_C Location: 222189-2223 69 bp Feature: gene Location: 222543-222923 bp Feature: gene Location: 877830-878507 bp Ori: EEX22731.1 Feature: domain Description: Ga5DH-like_SDR_c Location: 877836-878502 bp Feature: domain Description: Ga5DH-like_SDR_c Location: 87783 6-878502 bp Feature: gene Location: 878613-879167 bp Ori: EEX22732.1 Feature: domain Description: HNHc Note: nucleases Location: 878904-879015 bp Feature: domain Description: HNHc Note: nucleases Location: 878904-879015 bp Feature: gene Location: 879258-880532 bp Ori: EEX22733.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 879624-880323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 879624-8803 23 bp Feature: gene Location: 881228-881866 bp Ori: EEX22734.1 Feature: domain Description: rpsA Location: 881240-881834 bp Feature: domain Description: rpsA Location: 881240-88183 4 bp Feature: gene Location: 882117-882785 bp Ori: EEX22735.1 Feature: domain Description: FadR Location: 882132-882774 bp Feature: domain Description: FadR Location: 88213 2-882774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), Avd_like (cd16376), RVT-DGRs, Phytochelatin_C (pfam09328), Ga5DH-like_SDR_c (cd05347), HNHc (smart00507), RVT-GII, rpsA (TIGR00717), FadR (COG2186)

Seq: GG698589.1 Blautia hansenii DSM 20583 genomic scaffold Scfld1, whole genome shotgun sequence (762426 bp)
Overview 1 RT 1: 346202-350942 bp 2 RT 2: 404972-409715 bp 3 RT 3: 567868-574873 bp Neighborhood of RT #1 [346202, 350942] MATE_MepA_like RVT-GII HTH_XRE DNA_ligase_A_N Neighborhood of RT #2 [404972, 409903] RVT-UG27 GP88 Neighborhood of RT #3 [567868, 574896] SurA_N_3 RVT-GII GIIM carB CcmA Feature: gene Location: 346202-347503 bp Ori: EEX21974.1 Feature: domain Description: MATE_MepA_like Location: 346214-347471 bp Feature: domain Description: MATE_MepA_like Location: 34 6214 -34 74 71 bp Feature: gene Location: 347725-347904 bp Feature: gene Location: 347877-349289 bp Ori: EEX21976.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 348249-348939 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 824 9-34 8939 bp Feature: gene Location: 349464-350270 bp Ori: EEX21977.1 Feature: domain Description: HTH_XRE Location: 349491-349662 bp Feature: domain Description: HTH_XRE Location: 34 94 91-34 9662 bp Feature: domain Description: DNA_ligase_A_N Location: 349995-350241 bp Feature: domain Description: DNA_ligase_A_N Location: 34 9995-35024 1 bp Feature: gene Location: 350754-350942 bp Feature: gene Location: 404972-405454 bp Feature: gene Location: 405501-406346 bp Feature: gene Location: 406661-407941 bp Ori: EEX21796.1 Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 406853-407501 bp Feature: RT Description: RVT-UG27 Note: UG27 RT Location: 4 06853-4 07501 bp Feature: gene Location: 407946-409301 bp Feature: gene Location: 409301-409903 bp Ori: EEX21798.1 Feature: domain Description: GP88 Location: 409391-409715 bp Feature: domain Description: GP88 Location: 4 09391-4 09715 bp Feature: gene Location: 567868-568833 bp Ori: EEX21596.1 Feature: domain Description: SurA_N_3 Location: 568390-568615 bp Feature: domain Description: SurA_N_3 Location: 568390-568615 bp Feature: gene Location: 569131-569286 bp Feature: gene Location: 569306-570718 bp Ori: EEX21598.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569657-570278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 569657-570278 bp Feature: domain Description: GIIM Note: maturase Location: 570332-570557 bp Feature: domain Description: GIIM Note: maturase Location: 570332-570557 bp Feature: gene Location: 570812-574030 bp Ori: EEX21599.1 Gene: carB Feature: domain Description: carB Location: 570815-574016 bp Feature: domain Description: carB Location: 570815-574 016 bp Feature: gene Location: 574192-574896 bp Ori: EEX21600.1 Feature: domain Description: CcmA Location: 574195-574873 bp Feature: domain Description: CcmA Location: 574 195-574 873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MATE_MepA_like (cd13143), RVT-GII, HTH_XRE (smart00530), DNA_ligase_A_N (pfam04675), RVT-UG27, GP88 (pfam17338), SurA_N_3 (pfam13624), GIIM (pfam08388), carB (PRK12815), CcmA (COG4133)