myRT

myRT report for GCA_000156735.1_ASM15673v1

Download annotations/find similar RTs

Seq: DS996944.1 Wolbachia endosymbiont of Culex quinquefasciatus JHB scaf_1316 genomic scaffold, whole genome shotgun sequence (70442 bp)
Overview 1 RT 1: 24880-29919 bp Neighborhood of RT #1 [24880, 29919] PRK00024 HTH_XRE T_den_put_tspse HTH_XRE RVT-GII GIIM PDDEXK_2 Feature: gene Location: 24880-25536 bp Feature: domain Description: PRK00024 Location: 24898-25531 bp Feature: domain Description: PRK00024 Location: 24898-25531 bp Feature: gene Location: 25707-26639 bp Feature: domain Description: HTH_XRE Location: 25764-25932 bp Feature: domain Description: HTH_XRE Location: 25764-25932 bp Feature: domain Description: T_den_put_tspse Location: 26070-26178 bp Feature: domain Description: T_den_put_tspse Location: 26070-261 78 bp Feature: domain Description: HTH_XRE Location: 26220-26379 bp Feature: domain Description: HTH_XRE Location: 26220-26379 bp Feature: gene Location: 26906-28249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27191-27830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 271 91 -27830 bp Feature: domain Description: GIIM Note: maturase Location: 27902-28121 bp Feature: domain Description: GIIM Note: maturase Location: 27902-281 21 bp Feature: gene Location: 28586-29611 bp Feature: domain Description: PDDEXK_2 Location: 28760-29420 bp Feature: domain Description: PDDEXK_2 Location: 28760-29420 bp Feature: gene Location: 29719-29919 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00024 (DNA repair protein RadC), HTH_XRE (smart00530), T_den_put_tspse (TIGR01784), RVT-GII, GIIM (pfam08388), PDDEXK_2 (pfam12784)

Seq: DS996942.1 Wolbachia endosymbiont of Culex quinquefasciatus JHB scaf_1311 genomic scaffold, whole genome shotgun sequence (1389502 bp)
Overview 1 RT 1: 580156-589099 bp 2 RT 2: 978582-986316 bp 3 RT 3: 1351805-1357024 bp Neighborhood of RT #1 [580156, 589099] KOG4391 PerM RVT-GII GIIM PerM RVT_N RVT-GII RVT-GII GIIM RVT-GII GIIM PRK09087 Neighborhood of RT #2 [978582, 986333] holA RVT-GII GIIM PRK12558 TypA Neighborhood of RT #3 [1351805, 1357053] ANK Ank ANK ANK RVT-GII Tail_P2_I J Feature: gene Location: 580156-580722 bp Feature: domain Description: KOG4391 Location: 580213-580570 bp Feature: domain Description: KOG4391 Location: 5802 13-580570 bp Feature: gene Location: 580772-581296 bp Feature: domain Description: PerM Location: 580793-581216 bp Feature: domain Description: PerM Location: 580793-5812 16 bp Feature: gene Location: 581734-583077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 582019-582658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 582 019-582 658 bp Feature: domain Description: GIIM Note: maturase Location: 582730-582949 bp Feature: domain Description: GIIM Note: maturase Location: 582 730-582 949 bp Feature: gene Location: 583155-583832 bp Feature: domain Description: PerM Location: 583209-583818 bp Feature: domain Description: PerM Location: 5832 09-583818 bp Feature: gene Location: 584510-585361 bp Feature: RT Description: RVT_N Location: 584561-584804 bp Feature: RT Description: RVT_N Location: 584561-584804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 584849-585353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 584849-585353 bp Feature: gene Location: 585873-587117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 586077-586734 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 586077-586734 bp Feature: domain Description: GIIM Note: maturase Location: 586815-587034 bp Feature: domain Description: GIIM Note: maturase Location: 586815-587034 bp Feature: gene Location: 587150-587905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 587204-587348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5872 04-587348 bp Feature: domain Description: GIIM Note: maturase Location: 587399-587633 bp Feature: domain Description: GIIM Note: maturase Location: 587399-587633 bp Feature: gene Location: 588082-588717 bp Feature: domain Description: PRK09087 Location: 588112-588667 bp Feature: domain Description: PRK09087 Location: 588112 -588667 bp Feature: gene Location: 588929-589099 bp Feature: gene Location: 978582-978764 bp Feature: gene Location: 978770-979789 bp Feature: domain Description: holA Location: 978773-979739 bp Feature: domain Description: holA Location: 978773-979739 bp Feature: gene Location: 980370-981614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 980574-981231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 980574-9812 31 bp Feature: domain Description: GIIM Note: maturase Location: 981312-981531 bp Feature: domain Description: GIIM Note: maturase Location: 981312 -981531 bp Feature: gene Location: 982947-984281 bp Feature: domain Description: PRK12558 Location: 982950-984252 bp Feature: domain Description: PRK12 558 Location: 982 950-9842 52 bp Feature: gene Location: 984504-986333 bp Feature: domain Description: TypA Location: 984519-986316 bp Feature: domain Description: TypA Location: 984519-986316 bp Feature: gene Location: 1351805-1352278 bp Feature: domain Description: ANK Location: 1351844-1351925 bp Feature: domain Description: ANK Location: 1351844-135192 5 bp Feature: domain Description: Ank Location: 1351982-1352066 bp Feature: domain Description: Ank Location: 1351982 -1352 066 bp Feature: domain Description: ANK Location: 1352090-1352216 bp Feature: domain Description: ANK Location: 1352 090-1352 2 16 bp Feature: gene Location: 1352317-1353129 bp Feature: domain Description: ANK Location: 1352482-1352833 bp Feature: domain Description: ANK Location: 1352 482 -1352 833 bp Feature: gene Location: 1353141-1354442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1353396-1354086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1353396-1354086 bp Feature: gene Location: 1355108-1356268 bp Feature: domain Description: Tail_P2_I Location: 1355117-1355441 bp Feature: domain Description: Tail_P2 _I Location: 1355117-1355441 bp Feature: gene Location: 1356268-1357053 bp Feature: domain Description: J Location: 1356274-1357024 bp Feature: domain Description: J Location: 13562 74-135702 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG4391 (KOG4391, Predicted alpha/beta hydrolase BEM46 ), PerM (COG0628), RVT-GII, GIIM (pfam08388), RVT_N (pfam13655), PRK09087 (hypothetical protein; Validated), holA (TIGR01128), PRK12558 (glutamyl-tRNA synthetase; Provisional), TypA (COG1217), ANK (smart00248)
Ank (pfam00023), Tail_P2_I (pfam09684), J (PHA02568)