myRT

myRT report for GCA_000157055.1_ASM15705v1

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Seq: EQ973388.1 Bacteroides sp. 2_2_4 supercont1.34 genomic scaffold, whole genome shotgun sequence (2493 bp)
Overview 1 RT 1: 574-2044 bp Neighborhood of RT #1 [574, 2376] matK RVT-GII Intron_maturas2 Feature: gene Location: 574-2376 bp Ori: EEO58986.1 Gene: ltrA Feature: domain Description: matK Location: 643-730 bp Feature: domain Description: matK Location: 643-730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838-1660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 838-1 660 bp Feature: domain Description: Intron_maturas2 Location: 1810-2044 bp Feature: domain Description: Intron_maturas2 Location: 1 81 0-2044 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT matK (CHL00002), RVT-GII, Intron_maturas2 (pfam01348)

Seq: EQ973391.1 Bacteroides sp. 2_2_4 supercont1.37 genomic scaffold, whole genome shotgun sequence (2429 bp)
Overview 1 RT 1: 42-1918 bp Neighborhood of RT #1 [42, 2292] RVT_N RVT-GII GIIM Feature: gene Location: 42-341 bp Feature: gene Location: 637-2292 bp Ori: EEO58990.1 Feature: domain Description: RVT_N Location: 694-931 bp Feature: domain Description: RVT_N Location: 694-931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 982-1630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 982 -1630 bp Feature: domain Description: GIIM Note: maturase Location: 1687-1918 bp Feature: domain Description: GIIM Note: maturase Location: 1687-1918 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: EQ973389.1 Bacteroides sp. 2_2_4 supercont1.35 genomic scaffold, whole genome shotgun sequence (2486 bp)
Overview 1 RT 1: 114-1890 bp Neighborhood of RT #1 [114, 1919] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 114-1919 bp Ori: EEO58987.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 378-1200 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 78-1200 bp Feature: domain Description: Intron_maturas2 Location: 1278-1584 bp Feature: domain Description: Intron_maturas2 Location: 1278-1584 bp Feature: domain Description: HNHc Note: nucleases Location: 1746-1890 bp Feature: domain Description: HNHc Note: nucleases Location: 1746-1890 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: EQ973387.1 Bacteroides sp. 2_2_4 supercont1.33 genomic scaffold, whole genome shotgun sequence (2509 bp)
Overview 1 RT 1: 583-2368 bp Neighborhood of RT #1 [583, 2406] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 583-2406 bp Ori: EEO58985.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 847-1669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84 7-1669 bp Feature: domain Description: Intron_maturas2 Location: 1843-2086 bp Feature: domain Description: Intron_maturas2 Location: 184 3-2086 bp Feature: domain Description: HNHc Note: nucleases Location: 2197-2368 bp Feature: domain Description: HNHc Note: nucleases Location: 2197-2368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: EQ973390.1 Bacteroides sp. 2_2_4 supercont1.36 genomic scaffold, whole genome shotgun sequence (2485 bp)
Overview 1 RT 1: 115-1579 bp Neighborhood of RT #1 [115, 1923] RVT-GII Intron_maturas2 Feature: gene Location: 115-1923 bp Ori: EEO58988.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379-1201 bp Feature: domain Description: Intron_maturas2 Location: 1270-1579 bp Feature: domain Description: Intron_maturas2 Location: 1270-15 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348)

Seq: EQ973359.1 Bacteroides sp. 2_2_4 supercont1.5 genomic scaffold, whole genome shotgun sequence (589452 bp)
Overview 1 RT 1: 316806-319253 bp 2 RT 2: 465946-469448 bp Neighborhood of RT #1 [316806, 319253] RVT-DGRs Neighborhood of RT #2 [465946, 469477] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 316806-317201 bp Feature: gene Location: 317223-317807 bp Feature: gene Location: 317951-318766 bp Ori: EEO55552.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 318269-318605 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 31826 9-3186 05 bp Feature: gene Location: 318828-319028 bp Feature: gene Location: 319050-319253 bp Feature: gene Location: 465946-466233 bp Feature: gene Location: 466437-466715 bp Feature: gene Location: 466678-468003 bp Ori: EEO55704.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 466957-467683 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 46 6 957-46 76 83 bp Feature: gene Location: 468114-468521 bp Ori: EEO55705.1 Feature: domain Description: Avd_like Location: 468147-468456 bp Feature: domain Description: Avd_like Location: 46 8147-46 8456 bp Feature: gene Location: 468668-469477 bp Ori: EEO55706.1 Feature: domain Description: DUF1566 Location: 469199-469448 bp Feature: domain Description: DUF156 6 Location: 46 9199-46 9448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: EQ973356.1 Bacteroides sp. 2_2_4 supercont1.2 genomic scaffold, whole genome shotgun sequence (733100 bp)
Overview 1 RT 1: 52627-58667 bp Neighborhood of RT #1 [52627, 59323] NGN_SP_UpxY KOW_NusG Phage_int_SAM_5 INTN1_C_like RVT-Retrons REC Feature: gene Location: 52627-53205 bp Ori: EEO53786.1 Feature: domain Description: NGN_SP_UpxY Location: 52705-52987 bp Feature: domain Description: NGN_SP_UpxY Location: 527 05-52987 bp Feature: domain Description: KOW_NusG Location: 53038-53149 bp Feature: domain Description: KOW_NusG Location: 53038-53149 bp Feature: gene Location: 53541-54506 bp Ori: EEO53787.1 Feature: domain Description: Phage_int_SAM_5 Location: 53574-53817 bp Feature: domain Description: Phage_int_SAM_5 Location: 5357 4-53817 bp Feature: domain Description: INTN1_C_like Location: 53901-54420 bp Feature: domain Description: INTN1_C_like Location: 53901-54420 bp Feature: gene Location: 54926-57001 bp Ori: EEO53788.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54983-55568 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54983-55568 bp Feature: gene Location: 56973-57623 bp Feature: gene Location: 57620-59323 bp Ori: EEO53790.1 Feature: domain Description: REC Location: 58427-58667 bp Feature: domain Description: REC Location: 58427 -58667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NGN_SP_UpxY (cd09895), KOW_NusG (cd06091), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons, REC (smart00448)

Seq: EQ973357.1 Bacteroides sp. 2_2_4 supercont1.3 genomic scaffold, whole genome shotgun sequence (605506 bp)
Overview 1 RT 1: 9429-13483 bp Neighborhood of RT #1 [9429, 13518] DUF3575 HTH_28 RVT-GII RVT_N RVT-GII GDPD_like_2 Feature: gene Location: 9429-10649 bp Ori: EEO54374.1 Feature: domain Description: DUF3575 Location: 10176-10641 bp Feature: domain Description: DUF3575 Location: 10176-10641 bp Feature: gene Location: 10849-11139 bp Ori: EEO54375.1 Feature: domain Description: HTH_28 Location: 10873-11020 bp Feature: domain Description: HTH_28 Location: 108 73-11020 bp Feature: gene Location: 11260-11457 bp Ori: EEO54376.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11263-11455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11263-11455 bp Feature: gene Location: 11435-11785 bp Ori: EEO54377.1 Feature: domain Description: RVT_N Location: 11438-11636 bp Feature: domain Description: RVT_N Location: 11438 -11636 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11690-11759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11690-11759 bp Feature: gene Location: 12501-12701 bp Feature: gene Location: 12757-13518 bp Ori: EEO54379.1 Feature: domain Description: GDPD_like_2 Location: 12826-13483 bp Feature: domain Description: GDPD_like_2 Location: 128 26-1348 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3575 (pfam12099), HTH_28 (pfam13518), RVT-GII, RVT_N (pfam13655), GDPD_like_2 (cd08582)

Seq: EQ973358.1 Bacteroides sp. 2_2_4 supercont1.4 genomic scaffold, whole genome shotgun sequence (590670 bp)
Overview 1 RT 1: 291171-301010 bp Neighborhood of RT #1 [291171, 301083] RVT-Retrons DUF3320 DUF3320 DUF4011 DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 Feature: gene Location: 291171-291272 bp Feature: gene Location: 291259-293433 bp Feature: gene Location: 293639-294769 bp Ori: EEO54998.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 293960-294503 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29 39 60-29 4503 bp Feature: gene Location: 294771-295472 bp Ori: EEO54999.1 Feature: domain Description: DUF3320 Location: 294981-295122 bp Feature: domain Description: DUF3320 Location: 29 49 81-29 5122 bp Feature: domain Description: DUF3320 Location: 295329-295389 bp Feature: domain Description: DUF3320 Location: 29 5329 -29 5389 bp Feature: gene Location: 295856-301083 bp Ori: EEO55000.1 Feature: domain Description: DUF4011 Location: 297014-297527 bp Feature: domain Description: DUF4011 Location: 29 7014-29 7527 bp Feature: domain Description: DEXXQc_SF1 Location: 297866-298832 bp Feature: domain Description: DEXXQc_SF1 Location: 29 7866-29 8832 bp Feature: domain Description: DEXXQc_SF1 Location: 299294-300053 bp Feature: domain Description: DEXXQc_SF1 Location: 29 9 29 4-300053 bp Feature: domain Description: KOG1803 Location: 300188-300566 bp Feature: domain Description: KOG1803 Location: 300188-300566 bp Feature: domain Description: MTES_1575 Location: 300725-301010 bp Feature: domain Description: MTES_1575 Location: 300725-301010 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF3320 (pfam11784), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741)

Seq: EQ973399.1 Bacteroides sp. 2_2_4 supercont1.45 genomic scaffold, whole genome shotgun sequence (1259 bp)
Overview 1 RT 1: 22-898 bp Neighborhood of RT #1 [22, 1155] RVT-GII GIIM Feature: gene Location: 22-1155 bp Ori: EEO59001.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25-610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25-610 bp Feature: domain Description: GIIM Note: maturase Location: 664-898 bp Feature: domain Description: GIIM Note: maturase Location: 664-898 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)