myRT

myRT report for GCA_000157095.2_Bacteroides_sp_D1_V2

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Seq: JH114351.1 Bacteroides sp. D1 genomic scaffold supercont2.22, whole genome shotgun sequence (91521 bp)
Overview 1 RT 1: 79369-83531 bp Neighborhood of RT #1 [79369, 83531] dnaG RVT-GII Intron_maturas2 Feature: gene Location: 79369-79560 bp Feature: gene Location: 79667-79825 bp Feature: domain Description: dnaG Location: 79736-79817 bp Feature: domain Description: dnaG Location: 79736-7981 7 bp Feature: gene Location: 80375-82204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80660-81482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80660-81 482 bp Feature: domain Description: Intron_maturas2 Location: 81551-81860 bp Feature: domain Description: Intron_maturas2 Location: 81 551 -81 860 bp Feature: gene Location: 83130-83531 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-GII, Intron_maturas2 (pfam01348)

Seq: JH114348.1 Bacteroides sp. D1 genomic scaffold supercont2.19, whole genome shotgun sequence (244953 bp)
Overview 1 RT 1: 153034-165435 bp Neighborhood of RT #1 [153034, 165560] rpsA DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 RVT-Retrons PDDEXK_2 Feature: gene Location: 153034-154833 bp Feature: domain Description: rpsA Location: 153103-154702 bp Feature: domain Description: rpsA Location: 153103-154702 bp Feature: gene Location: 154930-160971 bp Feature: domain Description: DUF4011 Location: 156160-156673 bp Feature: domain Description: DUF4011 Location: 156160-156673 bp Feature: domain Description: DEXXQc_SF1 Location: 157012-157441 bp Feature: domain Description: DEXXQc_SF1 Location: 157012 -157441 bp Feature: domain Description: DEXXQc_SF1 Location: 158443-159199 bp Feature: domain Description: DEXXQc_SF1 Location: 158443-159199 bp Feature: domain Description: TIGR00376 Location: 159328-159718 bp Feature: domain Description: TIGR00376 Location: 15932 8-159718 bp Feature: domain Description: MTES_1575 Location: 159871-160156 bp Feature: domain Description: MTES_1575 Location: 159871-160156 bp Feature: domain Description: DUF3320 Location: 160486-160621 bp Feature: domain Description: DUF332 0 Location: 160486-16062 1 bp Feature: gene Location: 161022-162152 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 161343-161886 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 161343-161886 bp Feature: gene Location: 162360-164567 bp Feature: gene Location: 164736-165560 bp Feature: domain Description: PDDEXK_2 Location: 164757-165435 bp Feature: domain Description: PDDEXK_2 Location: 164757-165435 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpsA (TIGR00717), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), RVT-Retrons, PDDEXK_2 (pfam12784)

Seq: JH114339.1 Bacteroides sp. D1 genomic scaffold supercont2.10, whole genome shotgun sequence (613812 bp)
Overview 1 RT 1: 341223-352377 bp Neighborhood of RT #1 [341223, 352457] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Bac_Flav_CT_G DUF4133 Feature: gene Location: 341223-343748 bp Feature: gene Location: 343745-344290 bp Feature: domain Description: Bac_Flav_CT_G Location: 343763-344177 bp Feature: domain Description: Bac_Flav_CT_G Location: 3 43 763 -3 44177 bp Feature: gene Location: 344368-346179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344632-345454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 4463 2-3 45454 bp Feature: domain Description: Intron_maturas2 Location: 345529-345844 bp Feature: domain Description: Intron_maturas2 Location: 3 45529-3 45844 bp Feature: domain Description: HNHc Note: nucleases Location: 346000-346150 bp Feature: domain Description: HNHc Note: nucleases Location: 3 46000-3 46150 bp Feature: gene Location: 346726-346906 bp Feature: gene Location: 347007-347157 bp Feature: gene Location: 347631-349442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347895-348717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 47895-3 48717 bp Feature: domain Description: Intron_maturas2 Location: 348786-349113 bp Feature: domain Description: Intron_maturas2 Location: 3 48786-3 49113 bp Feature: domain Description: HNHc Note: nucleases Location: 349269-349413 bp Feature: domain Description: HNHc Note: nucleases Location: 3 49269-3 49413 bp Feature: gene Location: 349993-352062 bp Feature: domain Description: Bac_Flav_CT_G Location: 350134-351646 bp Feature: domain Description: Bac_Flav_CT_G Location: 3 5013 4-3 51646 bp Feature: domain Description: Bac_Flav_CT_G Location: 351727-352045 bp Feature: domain Description: Bac_Flav_CT_G Location: 3 51727-3 52045 bp Feature: gene Location: 352161-352457 bp Feature: domain Description: DUF4133 Location: 352203-352377 bp Feature: domain Description: DUF413 3 Location: 3 52203 -3 523 77 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571)

Seq: JH114350.1 Bacteroides sp. D1 genomic scaffold supercont2.21, whole genome shotgun sequence (1170575 bp)
Overview 1 RT 1: 370983-374485 bp 2 RT 2: 597706-603749 bp Neighborhood of RT #1 [370983, 374514] RVT-DGRs Avd_like DUF1566 Neighborhood of RT #2 [597706, 604402] NGN_SP_UpxY KOW_NusG Phage_int_SAM_5 INTN1_C_like RVT-Retrons REC Feature: gene Location: 370983-371270 bp Feature: gene Location: 371474-371752 bp Feature: gene Location: 371715-373136 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 372090-372816 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 372090-372816 bp Feature: gene Location: 373151-373558 bp Feature: domain Description: Avd_like Location: 373184-373493 bp Feature: domain Description: Avd_like Location: 373184 -3734 93 bp Feature: gene Location: 373705-374514 bp Feature: domain Description: DUF1566 Location: 374236-374485 bp Feature: domain Description: DUF1566 Location: 374 236-374 4 85 bp Feature: gene Location: 597706-598284 bp Feature: domain Description: NGN_SP_UpxY Location: 597784-598066 bp Feature: domain Description: NGN_SP_UpxY Location: 597784 -598066 bp Feature: domain Description: KOW_NusG Location: 598117-598228 bp Feature: domain Description: KOW_NusG Location: 598117-598228 bp Feature: gene Location: 598620-599585 bp Feature: domain Description: Phage_int_SAM_5 Location: 598653-598896 bp Feature: domain Description: Phage_int_SAM_5 Location: 598653-598896 bp Feature: domain Description: INTN1_C_like Location: 598977-599499 bp Feature: domain Description: INTN1_C_like Location: 598977-5994 99 bp Feature: gene Location: 599861-602080 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 600062-600647 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 600062-60064 7 bp Feature: gene Location: 602058-602702 bp Feature: gene Location: 602699-604402 bp Feature: domain Description: REC Location: 603518-603749 bp Feature: domain Description: REC Location: 603518-60374 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603), NGN_SP_UpxY (cd09895), KOW_NusG (cd06091), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons, REC (smart00448)