myRT

myRT report for GCA_000158515.2_Bacteroides_sp_4_3_47FAA_V2

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Seq: JH114353.1 Bacteroides sp. 4_3_47FAA genomic scaffold supercont2.2, whole genome shotgun sequence (209880 bp)
Overview 1 RT 1: 57568-64287 bp 2 RT 2: 133266-142696 bp Neighborhood of RT #1 [57568, 64397] ArdC ArdC SSB_OBF SSB_OBF RVT-GII Intron_maturas2 HNHc FlgJ LYZ2 Neighborhood of RT #2 [133266, 142696] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 57568-59352 bp Feature: domain Description: ArdC Location: 57628-57835 bp Feature: domain Description: ArdC Location: 57628-57835 bp Feature: domain Description: ArdC Location: 57910-58573 bp Feature: domain Description: ArdC Location: 5791 0-58573 bp Feature: gene Location: 59355-59972 bp Feature: domain Description: SSB_OBF Location: 59373-59598 bp Feature: domain Description: SSB_OBF Location: 59373-59598 bp Feature: domain Description: SSB_OBF Location: 59682-59820 bp Feature: domain Description: SSB_OBF Location: 59682-59820 bp Feature: gene Location: 61415-63223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61679-62501 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 679-62501 bp Feature: domain Description: Intron_maturas2 Location: 62645-62900 bp Feature: domain Description: Intron_maturas2 Location: 62645-62900 bp Feature: domain Description: HNHc Note: nucleases Location: 63056-63197 bp Feature: domain Description: HNHc Note: nucleases Location: 63056-631 97 bp Feature: gene Location: 63733-63972 bp Feature: domain Description: FlgJ Location: 63748-63874 bp Feature: domain Description: FlgJ Location: 63748-63874 bp Feature: gene Location: 64116-64397 bp Feature: domain Description: LYZ2 Location: 64122-64287 bp Feature: domain Description: LYZ2 Location: 641 22-64287 bp Feature: gene Location: 133266-139985 bp Feature: domain Description: Laminin_G_3 Location: 134709-134787 bp Feature: domain Description: Laminin_G_3 Location: 1 34709-1 34787 bp Feature: domain Description: Laminin_G_3 Location: 135438-135864 bp Feature: domain Description: Laminin_G_3 Location: 1 35438-1 35864 bp Feature: gene Location: 139982-140176 bp Feature: gene Location: 140489-141793 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 140702-141377 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 40702-1 41 377 bp Feature: gene Location: 141790-142275 bp Feature: gene Location: 142454-142696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), SSB_OBF (cd04496), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), FlgJ (COG1705), LYZ2 (smart00047), Laminin_G_3 (pfam13385), RVT-DGRs

Seq: JH114360.1 Bacteroides sp. 4_3_47FAA genomic scaffold supercont2.9, whole genome shotgun sequence (73543 bp)
Overview 1 RT 1: 39151-47152 bp Neighborhood of RT #1 [39151, 47817] HelD UvrD UvrD RVT-Retrons Response_reg Feature: gene Location: 39151-40455 bp Feature: domain Description: HelD Location: 39193-39283 bp Feature: domain Description: HelD Location: 39193-392 83 bp Feature: domain Description: UvrD Location: 39655-40186 bp Feature: domain Description: UvrD Location: 39655-40186 bp Feature: domain Description: UvrD Location: 40252-40450 bp Feature: domain Description: UvrD Location: 402 52 -40450 bp Feature: gene Location: 40459-42180 bp Feature: gene Location: 42701-44428 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42881-43475 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 42 881-43475 bp Feature: gene Location: 44412-45590 bp Feature: gene Location: 45595-47817 bp Feature: domain Description: Response_reg Location: 46915-47152 bp Feature: domain Description: Response_reg Location: 46915-47152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HelD (COG3973), UvrD (COG0210), RVT-Retrons, Response_reg (pfam00072)

Seq: JH114362.1 Bacteroides sp. 4_3_47FAA genomic scaffold supercont2.11, whole genome shotgun sequence (853744 bp)
Overview 1 RT 1: 92426-96495 bp Neighborhood of RT #1 [92426, 96572] RVT-DGRs TipAS COG2369 LPD3 Feature: gene Location: 92426-92611 bp Feature: gene Location: 92871-93356 bp Feature: gene Location: 93353-94654 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 93563-94241 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 93 563 -94241 bp Feature: gene Location: 95030-95263 bp Feature: gene Location: 95361-96572 bp Feature: domain Description: TipAS Location: 95385-95688 bp Feature: domain Description: TipAS Location: 953 85-95688 bp Feature: domain Description: COG2369 Location: 95808-95994 bp Feature: domain Description: COG23 69 Location: 95808-95994 bp Feature: domain Description: LPD3 Location: 96213-96495 bp Feature: domain Description: LPD3 Location: 96213 -96495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, TipAS (pfam07739), COG2369 (Uncharacterized conserved protein, contains phage Mu gpF-like domain ), LPD3 (pfam18798)