myRT

myRT report for GCA_000159055.1_ASM15905v1

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Seq: GG730311.1 Clostridium sp. M62/1 genomic scaffold Scfld2, whole genome shotgun sequence (463016 bp)
Overview 1 RT 1: 124973-128718 bp Neighborhood of RT #1 [124973, 128804] Phage_XkdX RVT-DGRs DUF3751 Feature: gene Location: 124973-125128 bp Ori: EFE12576.1 Feature: domain Description: Phage_XkdX Location: 124994-125105 bp Feature: domain Description: Phage_XkdX Location: 1 24994-1 251 05 bp Feature: gene Location: 125128-125337 bp Feature: gene Location: 125330-126553 bp Ori: EFE12578.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 125624-126245 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 25624-1 26245 bp Feature: gene Location: 126976-128253 bp Feature: gene Location: 128253-128804 bp Ori: EFE12580.1 Feature: domain Description: DUF3751 Location: 128277-128718 bp Feature: domain Description: DUF3751 Location: 1 28277-1 2871 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, DUF3751 (pfam12571)

Seq: GG730309.1 Clostridium sp. M62/1 genomic scaffold Scfld0, whole genome shotgun sequence (947737 bp)
Overview 1 RT 1: 573377-577306 bp Neighborhood of RT #1 [573377, 577335] YjbM RVT-GII GIIM MalY MalY PhnO RimL Feature: gene Location: 573377-574120 bp Ori: EFE14682.1 Feature: domain Description: YjbM Location: 573470-574088 bp Feature: domain Description: YjbM Location: 573470-574088 bp Feature: gene Location: 574141-574350 bp Feature: gene Location: 574624-576009 bp Ori: EFE14684.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 574972-575629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 574972 -57562 9 bp Feature: domain Description: GIIM Note: maturase Location: 575710-575929 bp Feature: domain Description: GIIM Note: maturase Location: 575710-57592 9 bp Feature: gene Location: 576239-576448 bp Ori: EFE14685.1 Feature: domain Description: MalY Location: 576257-576359 bp Feature: domain Description: MalY Location: 5762 57-576359 bp Feature: domain Description: MalY Location: 576380-576434 bp Feature: domain Description: MalY Location: 576380-576434 bp Feature: gene Location: 576451-577335 bp Ori: EFE14686.1 Feature: domain Description: PhnO Location: 576532-576808 bp Feature: domain Description: PhnO Location: 576532 -576808 bp Feature: domain Description: RimL Location: 577087-577306 bp Feature: domain Description: RimL Location: 577087-577306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjbM (COG2357), RVT-GII, GIIM (pfam08388), MalY (COG1168), PhnO (COG0454), RimL (COG1670)

Seq: GG730312.1 Clostridium sp. M62/1 genomic scaffold Scfld3, whole genome shotgun sequence (412181 bp)
Overview 1 RT 1: 74770-83777 bp Neighborhood of RT #1 [74770, 83788] PRK05618 dnaG RVT-UNC RVT-UNC PHA02517 Feature: gene Location: 74770-75351 bp Ori: EFE12473.1 Feature: domain Description: PRK05618 Location: 74776-75340 bp Feature: domain Description: PRK05618 Location: 74776-753 40 bp Feature: gene Location: 75415-75552 bp Feature: gene Location: 75646-83181 bp Ori: EFE12475.1 Feature: domain Description: dnaG Location: 75661-76609 bp Feature: domain Description: dnaG Location: 75661-76609 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 77428-77674 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 77428-77674 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 77827-78076 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 77827-78076 bp Feature: gene Location: 83200-83475 bp Feature: gene Location: 83567-83788 bp Ori: EFE12477.1 Feature: domain Description: PHA02517 Location: 83606-83777 bp Feature: domain Description: PHA02517 Location: 83 606-83 777 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05618 (50S ribosomal protein L25/general stress protein Ctc; Reviewed), dnaG (TIGR01391), RVT-UG10/RVT-UG25(RVT-UNC), PHA02517 (putative transposase OrfB; Reviewed)

Seq: GG730315.1 Clostridium sp. M62/1 genomic scaffold Scfld6, whole genome shotgun sequence (205520 bp)
Overview 1 RT 1: 21192-24134 bp Neighborhood of RT #1 [21192, 24134] Phytochelatin_C RVT-DGRs Avd_like Feature: gene Location: 21192-21572 bp Feature: gene Location: 21585-21941 bp Ori: EFE11450.1 Feature: domain Description: Phytochelatin_C Location: 21600-21780 bp Feature: domain Description: Phytochelatin_C Location: 21600-21780 bp Feature: gene Location: 21920-23233 bp Ori: EFE11451.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 22301-22967 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 22301-22967 bp Feature: gene Location: 23493-23837 bp Ori: EFE11452.1 Feature: domain Description: Avd_like Location: 23517-23829 bp Feature: domain Description: Avd_like Location: 23517-23829 bp Feature: gene Location: 23885-24134 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phytochelatin_C (pfam09328), RVT-DGRs, Avd_like (cd16376)

Seq: GG730310.1 Clostridium sp. M62/1 genomic scaffold Scfld1, whole genome shotgun sequence (648183 bp)
Overview 1 RT 1: 14010-16924 bp 2 RT 2: 533497-539230 bp Neighborhood of RT #1 [14010, 16924] Cupin_2 RVT-Retrons Neighborhood of RT #2 [533497, 539230] TSPO_MBR RVT-Retrons COG4637 COG4637 Feature: gene Location: 14010-14576 bp Feature: gene Location: 14678-15004 bp Ori: EFE13609.1 Feature: domain Description: Cupin_2 Location: 14786-14987 bp Feature: domain Description: Cupin_2 Location: 14786-14987 bp Feature: gene Location: 15038-16081 bp Ori: EFE13610.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15233-15788 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15 233-15 788 bp Feature: gene Location: 16112-16420 bp Feature: gene Location: 16775-16924 bp Feature: gene Location: 533497-533808 bp Ori: EFE13361.1 Feature: domain Description: TSPO_MBR Location: 533500-533782 bp Feature: domain Description: TSPO_MBR Location: 5 335 00-5 33782 bp Feature: gene Location: 533990-534868 bp Feature: gene Location: 534913-536016 bp Ori: EFE13363.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 535042-535618 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5 35 042-5 35 618 bp Feature: gene Location: 536273-538279 bp Ori: EFE13364.1 Feature: domain Description: COG4637 Location: 536282-536414 bp Feature: domain Description: COG4637 Location: 5 36282-5 36414 bp Feature: domain Description: COG4637 Location: 537050-537215 bp Feature: domain Description: COG4637 Location: 5 3705 0-5 37215 bp Feature: gene Location: 538526-539230 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cupin_2 (pfam07883), RVT-Retrons, TSPO_MBR (cl01379), COG4637 (Predicted ATPase )