myRT

myRT report for GCA_000159075.2_Bact_sp_D2_V2

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Seq: JH636027.1 Bacteroides sp. D2 genomic scaffold supercont2.12, whole genome shotgun sequence (997220 bp)
Overview 1 RT 1: 218645-228107 bp Neighborhood of RT #1 [218645, 228107] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 218645-225382 bp Ori: EIC71774.1 Feature: domain Description: Laminin_G_3 Location: 220106-220184 bp Feature: domain Description: Laminin_G_3 Location: 2201 06-2201 84 bp Feature: domain Description: Laminin_G_3 Location: 220835-221261 bp Feature: domain Description: Laminin_G_3 Location: 220835-221 261 bp Feature: gene Location: 225379-225573 bp Feature: gene Location: 225899-227203 bp Ori: EFS32126.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 226112-226706 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2261 1 2-226706 bp Feature: gene Location: 227200-227685 bp Feature: gene Location: 227865-228107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Laminin_G_3 (pfam13385), RVT-DGRs

Seq: JH636026.1 Bacteroides sp. D2 genomic scaffold supercont2.11, whole genome shotgun sequence (1416020 bp)
Overview 1 RT 1: 676640-689527 bp Neighborhood of RT #1 [676640, 689643] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 676640-677119 bp Feature: gene Location: 678338-680449 bp Feature: gene Location: 680655-681785 bp Ori: EFS30577.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 680976-681519 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 680976-681519 bp Feature: gene Location: 681787-687744 bp Ori: EFS30576.1 Feature: domain Description: DUF4011 Location: 683017-683530 bp Feature: domain Description: DUF4011 Location: 683017-683530 bp Feature: domain Description: DEXXQc_SF1 Location: 683869-684640 bp Feature: domain Description: DEXXQc_SF1 Location: 683869-684640 bp Feature: domain Description: DEXXQc_SF1 Location: 685297-686056 bp Feature: domain Description: DEXXQc_SF1 Location: 6852 97-686056 bp Feature: domain Description: TIGR00376 Location: 686188-686575 bp Feature: domain Description: TIGR00376 Location: 686188-686575 bp Feature: domain Description: MTES_1575 Location: 686728-687013 bp Feature: domain Description: MTES_1575 Location: 68672 8-687013 bp Feature: domain Description: DUF3320 Location: 687253-687394 bp Feature: domain Description: DUF332 0 Location: 6872 53-687394 bp Feature: gene Location: 687841-689643 bp Ori: EFS30575.1 Feature: domain Description: rpsA Location: 687910-689527 bp Feature: domain Description: rpsA Location: 687910-68952 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: JH636018.1 Bacteroides sp. D2 genomic scaffold supercont2.3, whole genome shotgun sequence (534202 bp)
Overview 1 RT 1: 106905-118279 bp Neighborhood of RT #1 [106905, 118279] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-DGRs Laminin_G_3 pfam08757 LRR_AMN1 Feature: gene Location: 106905-108050 bp Ori: EFS33737.1 Feature: domain Description: Arm-DNA-bind_5 Location: 106929-107175 bp Feature: domain Description: Arm-DNA-bind_5 Location: 106929-107175 bp Feature: domain Description: Phage_int_SAM_5 Location: 107214-107499 bp Feature: domain Description: Phage_int_SAM_5 Location: 107214-107499 bp Feature: domain Description: INTN1_C_like Location: 107538-108012 bp Feature: domain Description: INTN1_C_like Location: 10753 8-108012 bp Feature: gene Location: 108099-108593 bp Feature: gene Location: 108595-109890 bp Ori: EFS33735.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 108811-109402 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 108811-109402 bp Feature: gene Location: 110324-117112 bp Ori: EFS33734.2 Feature: domain Description: Laminin_G_3 Location: 112760-113141 bp Feature: domain Description: Laminin_G_3 Location: 112760-113 141 bp Feature: domain Description: pfam08757 Location: 113936-114260 bp Feature: domain Description: pfam08757 Location: 113 93 6-114260 bp Feature: domain Description: LRR_AMN1 Location: 114866-115334 bp Feature: domain Description: LRR_AMN1 Location: 114866-1153 3 4 bp Feature: gene Location: 117122-118279 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-DGRs, Laminin_G_3 (pfam13385), pfam08757 (CotH;CotH kinase protein), LRR_AMN1 (sd00034)

Seq: JH636022.1 Bacteroides sp. D2 genomic scaffold supercont2.7, whole genome shotgun sequence (885347 bp)
Overview 1 RT 1: 415381-418912 bp Neighborhood of RT #1 [415381, 418912] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 415381-416190 bp Ori: EFS29656.1 Feature: domain Description: DUF1566 Location: 415912-416161 bp Feature: domain Description: DUF1566 Location: 4 15912-4 16161 bp Feature: gene Location: 416337-416744 bp Ori: EFS29655.1 Feature: domain Description: Avd_like Location: 416370-416679 bp Feature: domain Description: Avd_like Location: 4 16370-4 16679 bp Feature: gene Location: 416759-418180 bp Ori: EFS29654.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 417134-417836 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 4 17134 -4 17836 bp Feature: gene Location: 418143-418421 bp Feature: gene Location: 418625-418912 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs