myRT

myRT report for GCA_000159435.1_ASM15943v1

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Seq: GG693412.1 Lactobacillus vaginalis ATCC 49540 genomic scaffold SCAFFOLD1, whole genome shotgun sequence (693865 bp)
Overview 1 RT 1: 334561-341505 bp Neighborhood of RT #1 [334561, 341510] BaeS YfcC RVT-GII GIIM 2A0302 Feature: gene Location: 334561-335844 bp Feature: domain Description: BaeS Location: 335374-335824 bp Feature: domain Description: BaeS Location: 335374-335824 bp Feature: gene Location: 336047-337594 bp Feature: domain Description: YfcC Location: 336071-337589 bp Feature: domain Description: YfcC Location: 336071 -337589 bp Feature: gene Location: 338307-339419 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338625-339243 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 338625-339243 bp Feature: gene Location: 339380-339688 bp Feature: domain Description: GIIM Note: maturase Location: 339383-339524 bp Feature: domain Description: GIIM Note: maturase Location: 339383-339524 bp Feature: gene Location: 340053-341510 bp Feature: domain Description: 2A0302 Location: 340074-341505 bp Feature: domain Description: 2A0302 Location: 340074-341 505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaeS (COG0642), YfcC (COG1288), RVT-GII, GIIM (pfam08388), 2A0302 (TIGR00905)

Seq: GG693415.1 Lactobacillus vaginalis ATCC 49540 genomic scaffold SCAFFOLD4, whole genome shotgun sequence (294131 bp)
Overview 1 RT 1: 210664-216643 bp Neighborhood of RT #1 [210664, 216672] ddl HTH_XRE TPR TPR RVT-GII RVT-GII GIIM ARA1 PBP1_AraR Feature: gene Location: 210664-211944 bp Feature: domain Description: ddl Location: 210817-211855 bp Feature: domain Description: ddl Location: 2 10817-2 11855 bp Feature: gene Location: 212204-213046 bp Feature: domain Description: HTH_XRE Location: 212219-212381 bp Feature: domain Description: HTH_XRE Location: 2 12 2 19-2 12 381 bp Feature: domain Description: TPR Location: 212438-212618 bp Feature: domain Description: TPR Location: 2 12 438-2 12 618 bp Feature: domain Description: TPR Location: 212663-212972 bp Feature: domain Description: TPR Location: 2 12 663-2 12 972 bp Feature: gene Location: 213536-214210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 213854-214196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 13854-2 14196 bp Feature: gene Location: 214188-214925 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 214209-214479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 142 09-2 14479 bp Feature: domain Description: GIIM Note: maturase Location: 214533-214761 bp Feature: domain Description: GIIM Note: maturase Location: 2 14533-2 14761 bp Feature: gene Location: 215010-215849 bp Feature: domain Description: ARA1 Location: 215034-215799 bp Feature: domain Description: ARA1 Location: 2 15034-2 15799 bp Feature: gene Location: 215851-216672 bp Feature: domain Description: PBP1_AraR Location: 215854-216643 bp Feature: domain Description: PBP1_AraR Location: 2 15854-2 16643 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ddl (PRK01966), HTH_XRE (smart00530), TPR (smart00028), RVT-GII, GIIM (pfam08388), ARA1 (COG0656), PBP1_AraR (cd01541)