myRT

myRT report for GCA_000159855.2_Bact_sp_3_2_5_V2

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Seq: JH636044.1 Bacteroides sp. 3_2_5 genomic scaffold supercont2.2, whole genome shotgun sequence (3253542 bp)
Overview 1 RT 1: 1281917-1290875 bp 2 RT 2: 1426581-1429985 bp 3 RT 3: 2838791-2844635 bp Neighborhood of RT #1 [1281917, 1290883] GlnA3 RVT-Retrons rpsA RNase_Z Neighborhood of RT #2 [1426581, 1430053] HTH_17 RVT-Retrons COG3943 Neighborhood of RT #3 [2838791, 2844635] Cas_Cmr5 Cmr6_III-B RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Feature: gene Location: 1281917-1284106 bp Ori: EES87689.1 Feature: domain Description: GlnA3 Location: 1281992-1284104 bp Feature: domain Description: GlnA3 Location: 1 281 992-1 2841 04 bp Feature: gene Location: 1284346-1286565 bp Feature: gene Location: 1286772-1287884 bp Ori: EES87687.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1287087-1287636 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 287087-1 287636 bp Feature: gene Location: 1288026-1289819 bp Ori: EES87686.1 Feature: domain Description: rpsA Location: 1288104-1289712 bp Feature: domain Description: rpsA Location: 1 2881 04-1 28971 2 bp Feature: gene Location: 1289969-1290883 bp Ori: EES87685.1 Feature: domain Description: RNase_Z Location: 1289984-1290875 bp Feature: domain Description: RNase_Z Location: 1 289984-1 290875 bp Feature: gene Location: 1426581-1426946 bp Ori: EES87571.1 Feature: domain Description: HTH_17 Location: 1426716-1426854 bp Feature: domain Description: HTH_1 7 Location: 1 42671 6-1 426854 bp Feature: gene Location: 1427412-1427627 bp Feature: gene Location: 1427653-1428510 bp Ori: EES87569.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1427815-1428340 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 42781 5-1 428340 bp Feature: gene Location: 1428541-1429422 bp Feature: gene Location: 1429688-1430053 bp Ori: EES87567.1 Feature: domain Description: COG3943 Location: 1429727-1429985 bp Feature: domain Description: COG3943 Location: 1 429727-1 429985 bp Feature: gene Location: 2838791-2839201 bp Ori: EES86296.1 Feature: domain Description: Cas_Cmr5 Location: 2838839-2839085 bp Feature: domain Description: Cas_Cmr5 Location: 2838839-2839085 bp Feature: gene Location: 2839204-2840148 bp Ori: EES86297.2 Feature: domain Description: Cmr6_III-B Location: 2839360-2840137 bp Feature: domain Description: Cmr6_III-B Location: 2839360-28401 37 bp Feature: gene Location: 2840168-2842438 bp Ori: EES86298.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2840375-2840981 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2840375-2840981 bp Feature: domain Description: Cas1_I-II-III Location: 2841440-2842397 bp Feature: domain Description: Cas1 _I-II-III Location: 2841 440-2842397 bp Feature: gene Location: 2842432-2842722 bp Ori: EES86299.2 Feature: domain Description: Cas2_I_II_III Location: 2842459-2842669 bp Feature: domain Description: Cas2_I_II_III Location: 2842459-2842669 bp Feature: gene Location: 2844339-2844635 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651), HTH_17 (pfam12728), COG3943 (Uncharacterized conserved protein ), Cas_Cmr5 (pfam09701), Cmr6_III-B (cd09661), RVT-CRISPR, Cas1_I-II-III (cl00656)
Cas2_I_II_III (cl11442)