myRT

myRT report for GCA_000159875.2_Bact_sp_1_1_6_V2

Download annotations/find similar RTs

Seq: JH636037.1 Bacteroides sp. 1_1_6 genomic scaffold supercont2.10, whole genome shotgun sequence (1221565 bp)
Overview 1 RT 1: 700628-704107 bp Neighborhood of RT #1 [700628, 704136] RVT-DGRs Avd_like DUF1566 Feature: gene Location: 700628-700915 bp Feature: gene Location: 701120-701398 bp Feature: gene Location: 701361-702782 bp Ori: EES70154.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 701736-702462 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 701 736-702462 bp Feature: gene Location: 702797-703204 bp Ori: EES70153.1 Feature: domain Description: Avd_like Location: 702830-703139 bp Feature: domain Description: Avd_like Location: 702830-7031 39 bp Feature: gene Location: 703351-704136 bp Ori: EES70152.2 Feature: domain Description: DUF1566 Location: 703858-704107 bp Feature: domain Description: DUF1 566 Location: 703858-7041 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603)

Seq: JH636032.1 Bacteroides sp. 1_1_6 genomic scaffold supercont2.5, whole genome shotgun sequence (177498 bp)
Overview 1 RT 1: 30436-36638 bp Neighborhood of RT #1 [30436, 36733] BACON RVT-GII GIIM RVT-GII KOG1378 FAD_oxidored Feature: gene Location: 30436-30831 bp Ori: EES65948.1 Feature: domain Description: BACON Location: 30541-30820 bp Feature: domain Description: BACON Location: 30541-3082 0 bp Feature: gene Location: 31182-31439 bp Feature: gene Location: 31539-32228 bp Ori: EES65951.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31560-31959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31560-31959 bp Feature: domain Description: GIIM Note: maturase Location: 31974-32205 bp Feature: domain Description: GIIM Note: maturase Location: 31974-32 2 05 bp Feature: gene Location: 32231-32719 bp Ori: EES65952.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32567-32705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32 567-32 705 bp Feature: gene Location: 33604-34773 bp Ori: EES65953.1 Feature: domain Description: KOG1378 Location: 33715-34627 bp Feature: domain Description: KOG1378 Location: 33715-3462 7 bp Feature: gene Location: 34865-36733 bp Ori: EES65954.2 Feature: domain Description: FAD_oxidored Location: 35429-36638 bp Feature: domain Description: FAD_oxidored Location: 3542 9-36638 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BACON (pfam13004), RVT-GII, GIIM (pfam08388), KOG1378 (KOG1378, Purple acid phosphatase ), FAD_oxidored (pfam12831)

Seq: JH636040.1 Bacteroides sp. 1_1_6 genomic scaffold supercont2.13, whole genome shotgun sequence (447489 bp)
Overview 1 RT 1: 266012-271095 bp Neighborhood of RT #1 [266012, 271097] DUF3876 DUF4141 RVT_N RVT-GII GIIM Bac_Flav_CT_J Bac_Flav_CT_K Feature: gene Location: 266012-266368 bp Ori: EES66872.1 Feature: domain Description: DUF3876 Location: 266075-266345 bp Feature: domain Description: DUF3 876 Location: 266075-2663 45 bp Feature: gene Location: 266373-266585 bp Ori: EES66871.1 Feature: domain Description: DUF4141 Location: 266385-266541 bp Feature: domain Description: DUF4141 Location: 2663 85-266541 bp Feature: gene Location: 267209-268891 bp Ori: EES66870.1 Feature: domain Description: RVT_N Location: 267263-267506 bp Feature: domain Description: RVT_N Location: 267263 -267506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 267551-268205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 267551-268205 bp Feature: domain Description: GIIM Note: maturase Location: 268259-268490 bp Feature: domain Description: GIIM Note: maturase Location: 268259-268490 bp Feature: gene Location: 269436-270461 bp Ori: EES66869.1 Feature: domain Description: Bac_Flav_CT_J Location: 269454-270420 bp Feature: domain Description: Bac_Flav_CT_J Location: 269454-270420 bp Feature: gene Location: 270474-271097 bp Ori: EES66868.1 Feature: domain Description: Bac_Flav_CT_K Location: 270492-271095 bp Feature: domain Description: Bac_Flav_CT_K Location: 270492-271095 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3876 (pfam12992), DUF4141 (pfam13605), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Bac_Flav_CT_J (TIGR03782), Bac_Flav_CT_K (TIGR03781)

Seq: JH636029.1 Bacteroides sp. 1_1_6 genomic scaffold supercont2.2, whole genome shotgun sequence (1201016 bp)
Overview 1 RT 1: 773126-784967 bp 2 RT 2: 1094305-1101714 bp Neighborhood of RT #1 [773126, 785083] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 DUF3320 rpsA Neighborhood of RT #2 [1094305, 1101797] Relaxase YWFCY RVT_N RVT-GII GIIM RimL Feature: gene Location: 773126-773326 bp Feature: gene Location: 773728-775914 bp Feature: gene Location: 776120-777253 bp Ori: EES68347.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 776444-776996 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7764 4 4 -776996 bp Feature: gene Location: 777287-783115 bp Ori: EES68346.1 Feature: domain Description: DUF4011 Location: 778442-778955 bp Feature: domain Description: DUF4 011 Location: 7784 4 2-778955 bp Feature: domain Description: DEXXQc_SF1 Location: 779294-779894 bp Feature: domain Description: DEXXQc_SF1 Location: 779294 -779894 bp Feature: domain Description: DEXXQc_SF1 Location: 780731-781481 bp Feature: domain Description: DEXXQc_SF1 Location: 780731-7814 81 bp Feature: domain Description: SF1_C_Upf1 Location: 781490-782003 bp Feature: domain Description: SF1_C_Upf1 Location: 7814 90-782003 bp Feature: domain Description: MTES_1575 Location: 782153-782441 bp Feature: domain Description: MTES_1575 Location: 782153-7824 4 1 bp Feature: domain Description: DUF3320 Location: 782621-782765 bp Feature: domain Description: DUF3320 Location: 782621-782765 bp Feature: gene Location: 783284-785083 bp Ori: EES68345.1 Feature: domain Description: rpsA Location: 783353-784967 bp Feature: domain Description: rpsA Location: 783353-784 967 bp Feature: gene Location: 1094305-1095552 bp Ori: EES65783.1 Feature: domain Description: Relaxase Location: 1094485-1094866 bp Feature: domain Description: Relaxase Location: 1094 4 85-1094 866 bp Feature: gene Location: 1095583-1096509 bp Ori: EIC73069.1 Feature: domain Description: YWFCY Location: 1095592-1095769 bp Feature: domain Description: YWFCY Location: 1095592-1095769 bp Feature: gene Location: 1097147-1098799 bp Ori: EES65387.1 Feature: domain Description: RVT_N Location: 1097201-1097444 bp Feature: domain Description: RVT_N Location: 1097201-10974 4 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1097489-1098137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10974 89-1098137 bp Feature: domain Description: GIIM Note: maturase Location: 1098191-1098422 bp Feature: domain Description: GIIM Note: maturase Location: 1098191-10984 22 bp Feature: gene Location: 1100051-1100668 bp Feature: gene Location: 1100634-1101797 bp Ori: EES65781.1 Feature: domain Description: RimL Location: 1101276-1101714 bp Feature: domain Description: RimL Location: 1101276-1101714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717), Relaxase (pfam03432), YWFCY (pfam14293), RVT_N (pfam13655)
RVT-GII, GIIM (pfam08388), RimL (COG1670)

Seq: JH636038.1 Bacteroides sp. 1_1_6 genomic scaffold supercont2.11, whole genome shotgun sequence (538978 bp)
Overview 1 RT 1: 124773-128925 bp Neighborhood of RT #1 [124773, 128957] DUF1566 Avd_like RVT-DGRs catalase_clade_3 Feature: gene Location: 124773-125585 bp Ori: EES67571.1 Feature: domain Description: DUF1566 Location: 125307-125559 bp Feature: domain Description: DUF15 66 Location: 125 307-125 5 5 9 bp Feature: gene Location: 125731-126111 bp Ori: EES67572.1 Feature: domain Description: Avd_like Location: 125758-126064 bp Feature: domain Description: Avd_like Location: 125 75 8-126064 bp Feature: gene Location: 126126-127547 bp Ori: EES67573.2 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 126498-127227 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 126498-127227 bp Feature: gene Location: 127513-127788 bp Feature: gene Location: 127884-128957 bp Ori: EES67575.1 Feature: domain Description: catalase_clade_3 Location: 127920-128925 bp Feature: domain Description: catalase_clade_3 Location: 127920-128925 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, catalase_clade_3 (cd08156)

Seq: JH636035.1 Bacteroides sp. 1_1_6 genomic scaffold supercont2.8, whole genome shotgun sequence (572001 bp)
Overview 1 RT 1: 421772-430421 bp 2 RT 2: 446947-453547 bp Neighborhood of RT #1 [421772, 430546] Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc RVT-GII Intron_maturas2 HNHc DUF3876 DUF4141 SesA Neighborhood of RT #2 [446947, 453558] DUF4141 RVT-GII Intron_maturas2 HNHc KOG4768 Bac_Flav_CT_G Feature: gene Location: 421772-423517 bp Ori: EES65674.1 Feature: domain Description: Bac_Flav_CT_G Location: 421961-423497 bp Feature: domain Description: Bac_Flav_CT_G Location: 42196 1-423497 bp Feature: gene Location: 423575-424075 bp Feature: gene Location: 424083-425891 bp Ori: EES65676.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424347-425169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 424347-42516 9 bp Feature: domain Description: Intron_maturas2 Location: 425238-425550 bp Feature: domain Description: Intron_maturas2 Location: 425238-425550 bp Feature: domain Description: HNHc Note: nucleases Location: 425724-425865 bp Feature: domain Description: HNHc Note: nucleases Location: 425724-42586 5 bp Feature: gene Location: 427434-429257 bp Ori: EIC73002.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 427698-428520 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4276 98-428520 bp Feature: domain Description: Intron_maturas2 Location: 428682-428934 bp Feature: domain Description: Intron_maturas2 Location: 4286 82-428934 bp Feature: domain Description: HNHc Note: nucleases Location: 429048-429219 bp Feature: domain Description: HNHc Note: nucleases Location: 429048-429219 bp Feature: gene Location: 429513-429893 bp Ori: EES65678.1 Feature: domain Description: DUF3876 Location: 429594-429858 bp Feature: domain Description: DUF3876 Location: 429594-429858 bp Feature: gene Location: 429917-430546 bp Ori: EES65679.1 Feature: domain Description: DUF4141 Location: 429932-430085 bp Feature: domain Description: DUF4141 Location: 429932-430085 bp Feature: domain Description: SesA Location: 430091-430421 bp Feature: domain Description: SesA Location: 430091-430421 bp Feature: gene Location: 446947-447576 bp Ori: EES67948.1 Feature: domain Description: DUF4141 Location: 446959-447115 bp Feature: domain Description: DUF4141 Location: 446 959-447115 bp Feature: gene Location: 447617-448666 bp Feature: gene Location: 448908-450278 bp Ori: EES65353.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448911-449541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 448911-449541 bp Feature: domain Description: Intron_maturas2 Location: 449712-449958 bp Feature: domain Description: Intron_maturas2 Location: 449712-449958 bp Feature: domain Description: HNHc Note: nucleases Location: 450069-450240 bp Feature: domain Description: HNHc Note: nucleases Location: 45006 9-450240 bp Feature: gene Location: 450379-450593 bp Ori: EIC72993.1 Feature: domain Description: KOG4768 Location: 450403-450589 bp Feature: domain Description: KOG476 8 Location: 450403-450589 bp Feature: gene Location: 451162-453558 bp Ori: EES67950.1 Feature: domain Description: Bac_Flav_CT_G Location: 451165-453547 bp Feature: domain Description: Bac_Flav_CT_G Location: 45116 5-453547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF3876 (pfam12992), DUF4141 (pfam13605), SesA (pfam17107), KOG4768 (KOG4768, Mitochondrial mRNA maturase )