myRT

myRT report for GCA_000160095.1_ASM16009v1

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Seq: GG667650.1 Clostridium hathewayi DSM 13479 genomic scaffold Scfld43, whole genome shotgun sequence (28290 bp)
Overview 1 RT 1: 1-2797 bp Neighborhood of RT #1 [1, 3126] RVT-GII FlhG Feature: gene Location: 1-1279 bp Ori: EFC98925.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 316-1015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 6-1 01 5 bp Feature: gene Location: 2013-2339 bp Feature: gene Location: 2323-3126 bp Ori: EFC98927.1 Feature: domain Description: FlhG Location: 2326-2797 bp Feature: domain Description: FlhG Location: 2326-2797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, FlhG (COG0455)

Seq: GG667853.1 Clostridium hathewayi DSM 13479 genomic scaffold Scfld246, whole genome shotgun sequence (6284 bp)
Overview 1 RT 1: 247-3900 bp Neighborhood of RT #1 [247, 3900] Peptidase_A24 RVT-GII Intron_maturas2 Feature: gene Location: 247-654 bp Ori: EFC95236.1 Feature: domain Description: Peptidase_A24 Location: 277-559 bp Feature: domain Description: Peptidase_A2 4 Location: 2 77-559 bp Feature: gene Location: 1006-2754 bp Ori: EFC95237.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1333-2167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1333-2 167 bp Feature: domain Description: Intron_maturas2 Location: 2242-2569 bp Feature: domain Description: Intron_maturas2 Location: 2 2 42 -2 569 bp Feature: gene Location: 2859-2990 bp Feature: gene Location: 3643-3900 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidase_A24 (pfam01478), RVT-GII, Intron_maturas2 (pfam01348)

Seq: GG667731.1 Clostridium hathewayi DSM 13479 genomic scaffold Scfld124, whole genome shotgun sequence (15818 bp)
Overview 1 RT 1: 7343-10282 bp Neighborhood of RT #1 [7343, 10282] RVT-GII HTH_38 Feature: gene Location: 7343-7525 bp Feature: gene Location: 7625-7855 bp Feature: gene Location: 7833-8000 bp Ori: EFC96730.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7941-7998 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7941-7998 bp Feature: gene Location: 9090-9434 bp Ori: EFC96718.1 Feature: domain Description: HTH_38 Location: 9315-9402 bp Feature: domain Description: HTH_3 8 Location: 93 15-9402 bp Feature: gene Location: 9431-10282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_38 (pfam13936)

Seq: GG667666.1 Clostridium hathewayi DSM 13479 genomic scaffold Scfld59, whole genome shotgun sequence (22305 bp)
Overview 1 RT 1: 8520-11114 bp Neighborhood of RT #1 [8520, 11119] Phage_holin_Dp1 RVT-DGRs Phage_XkdX Feature: gene Location: 8520-8729 bp Ori: EFC98362.1 Feature: domain Description: Phage_holin_Dp1 Location: 8523-8709 bp Feature: domain Description: Phage_holin_Dp1 Location: 8523-8709 bp Feature: gene Location: 8722-9057 bp Feature: gene Location: 9083-10279 bp Ori: EFC98364.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9275-10094 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 9275-10094 bp Feature: gene Location: 10491-10979 bp Feature: gene Location: 10976-11119 bp Ori: EFC98366.1 Feature: domain Description: Phage_XkdX Location: 10997-11114 bp Feature: domain Description: Phage_XkdX Location: 10997-11114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_Dp1 (pfam16938), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: GG667764.1 Clostridium hathewayi DSM 13479 genomic scaffold Scfld157, whole genome shotgun sequence (13291 bp)
Overview 1 RT 1: 1-7973 bp Neighborhood of RT #1 [1, 7973] RVT-GII Feature: gene Location: 1-992 bp Ori: EFC96194.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265-988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265 -988 bp Feature: gene Location: 1545-6925 bp Feature: gene Location: 7853-7973 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: GG667615.1 Clostridium hathewayi DSM 13479 genomic scaffold Scfld8, whole genome shotgun sequence (90582 bp)
Overview 1 RT 1: 4170-9830 bp 2 RT 2: 17694-28465 bp Neighborhood of RT #1 [4170, 10114] SpoVG RVT-GII HNHc VirD4 Neighborhood of RT #2 [17694, 29178] DUF3991 Toprim_2 COG4646 KOG1000 RVT-GII HNHc ParB_N_like Feature: gene Location: 4170-4454 bp Ori: EFD00856.1 Feature: domain Description: SpoVG Location: 4197-4422 bp Feature: domain Description: SpoVG Location: 4197-4422 bp Feature: gene Location: 4468-4719 bp Feature: gene Location: 4980-6851 bp Ori: EFD00858.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5295-6021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5295-6 021 bp Feature: domain Description: HNHc Note: nucleases Location: 6573-6741 bp Feature: domain Description: HNHc Note: nucleases Location: 6 573-6 741 bp Feature: gene Location: 7606-7878 bp Feature: gene Location: 7862-10114 bp Ori: EFD00860.1 Feature: domain Description: VirD4 Location: 8591-9830 bp Feature: domain Description: VirD4 Location: 8591-9830 bp Feature: gene Location: 17694-18737 bp Ori: EFD00872.1 Feature: domain Description: DUF3991 Location: 18108-18321 bp Feature: domain Description: DUF3991 Location: 18108-18321 bp Feature: domain Description: Toprim_2 Location: 18366-18546 bp Feature: domain Description: Toprim_2 Location: 1836 6 -18546 bp Feature: gene Location: 18715-22884 bp Ori: EFD00873.1 Feature: domain Description: COG4646 Location: 18880-21574 bp Feature: domain Description: COG46 46 Location: 18880-21574 bp Feature: domain Description: KOG1000 Location: 21844-22144 bp Feature: domain Description: KOG1000 Location: 21844-22144 bp Feature: gene Location: 23154-25025 bp Ori: EFD00874.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23475-24210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23475-24210 bp Feature: domain Description: HNHc Note: nucleases Location: 24765-24906 bp Feature: domain Description: HNHc Note: nucleases Location: 2476 5-24906 bp Feature: gene Location: 25704-27995 bp Feature: gene Location: 28027-29178 bp Ori: EFD00876.1 Feature: domain Description: ParB_N_like Location: 28219-28465 bp Feature: domain Description: ParB_N_like Location: 28219-2846 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpoVG (pfam04026), RVT-GII, HNHc (smart00507), VirD4 (COG3505), DUF3991 (pfam13154), Toprim_2 (pfam13155), COG4646 (Adenine-specific DNA methylase, N12 class ), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), ParB_N_like (cd16411)

Seq: GG667724.1 Clostridium hathewayi DSM 13479 genomic scaffold Scfld117, whole genome shotgun sequence (23220 bp)
Overview 1 RT 1: 1-3608 bp Neighborhood of RT #1 [1, 3631] GDB1 RVT-Retrons RAYT PRK14806 Feature: gene Location: 1-90 bp Ori: EFC96871.1 Feature: domain Description: GDB1 Location: 13-70 bp Feature: domain Description: GDB1 Location: 13-7 0 bp Feature: gene Location: 470-1483 bp Ori: EFC96872.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 635-1190 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 635-1190 bp Feature: gene Location: 1681-2136 bp Ori: EFC96873.1 Feature: domain Description: RAYT Location: 1699-2077 bp Feature: domain Description: RAYT Location: 1699-207 7 bp Feature: gene Location: 2354-3631 bp Ori: EFC96874.1 Gene: aroA Feature: domain Description: PRK14806 Location: 2375-3608 bp Feature: domain Description: PRK14806 Location: 237 5-3608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GDB1 (COG3408), RVT-Retrons, RAYT (COG1943), PRK14806 (bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional)

Seq: GG668320.1 Clostridium hathewayi DSM 13479 genomic scaffold Scfld996, whole genome shotgun sequence (610 bp)
Overview 1 RT 1: 1-502 bp Neighborhood of RT #1 [1, 519] RVT-GII Feature: gene Location: 1-519 bp Ori: EFC94197.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28-502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28 -502 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII