myRT

myRT report for GCA_000161075.1_ASM16107v1

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Seq: CM000724.1 Bacillus cereus BDRD-ST26 chromosome, whole genome shotgun sequence (5568034 bp)
Overview 1 RT 1: 5112043-5117258 bp 2 RT 2: 5219270-5227442 bp 3 RT 3: 5351809-5360190 bp 4 RT 4: 5479472-5485397 bp Neighborhood of RT #1 [5112043, 5117263] COG4712 RVT-GII beta_clamp Neighborhood of RT #2 [5219270, 5227468] HTH_ARSR RVT_N RVT-GII GIIM DDE_Tnp_1 RepL Neighborhood of RT #3 [5351809, 5360195] Cache_2 Cache_2 Cache_2 RVT-GII HNHc PinE spore_ger_x_C Neighborhood of RT #4 [5479472, 5485397] spore_V_AE PRK12404 RVT-GII HNHc Feature: gene Location: 5112043-5112426 bp Feature: gene Location: 5112461-5112805 bp Feature: domain Description: COG4712 Location: 5112467-5112800 bp Feature: domain Description: COG471 2 Location: 51 1 2467-51 1 2800 bp Feature: gene Location: 5113567-5115465 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5113882-5114584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 1 3882-51 1 4584 bp Feature: gene Location: 5115543-5116070 bp Feature: gene Location: 5116151-5117263 bp Feature: domain Description: beta_clamp Location: 5116154-5117258 bp Feature: domain Description: beta_clamp Location: 51 1 61 54-51 1 7258 bp Feature: gene Location: 5219270-5220583 bp Feature: gene Location: 5221439-5221738 bp Feature: domain Description: HTH_ARSR Location: 5221502-5221712 bp Feature: domain Description: HTH_ARSR Location: 5221 502-5221 71 2 bp Feature: gene Location: 5222353-5223999 bp Feature: RT Description: RVT_N Location: 5222395-5222632 bp Feature: RT Description: RVT_N Location: 5222395-5222632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5222686-5223346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5222686-5223346 bp Feature: domain Description: GIIM Note: maturase Location: 5223415-5223646 bp Feature: domain Description: GIIM Note: maturase Location: 522341 5-5223646 bp Feature: gene Location: 5224838-5226298 bp Feature: domain Description: DDE_Tnp_1 Location: 5225225-5226023 bp Feature: domain Description: DDE_Tnp_1 Location: 5225225-5226023 bp Feature: gene Location: 5227010-5227468 bp Feature: domain Description: RepL Location: 5227025-5227442 bp Feature: domain Description: RepL Location: 5227025-5227442 bp Feature: gene Location: 5351809-5352036 bp Feature: gene Location: 5352118-5352933 bp Feature: domain Description: Cache_2 Location: 5352349-5352469 bp Feature: domain Description: Cache_2 Location: 5352349-5352469 bp Feature: domain Description: Cache_2 Location: 5352508-5352616 bp Feature: domain Description: Cache_2 Location: 5352508-535261 6 bp Feature: domain Description: Cache_2 Location: 5352646-5352763 bp Feature: domain Description: Cache_2 Location: 5352646-5352763 bp Feature: gene Location: 5354486-5356414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5354807-5355542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5354807-5355542 bp Feature: domain Description: HNHc Note: nucleases Location: 5356133-5356298 bp Feature: domain Description: HNHc Note: nucleases Location: 53561 33-5356298 bp Feature: gene Location: 5358186-5358737 bp Feature: domain Description: PinE Location: 5358189-5358729 bp Feature: domain Description: PinE Location: 53581 89-5358729 bp Feature: gene Location: 5359113-5360195 bp Feature: domain Description: spore_ger_x_C Location: 5359128-5360190 bp Feature: domain Description: spore_ger_x_C Location: 53591 28-53601 90 bp Feature: gene Location: 5479472-5479765 bp Feature: domain Description: spore_V_AE Location: 5479475-5479763 bp Feature: domain Description: spore_V_AE Location: 5479475-5479763 bp Feature: gene Location: 5479819-5480835 bp Feature: domain Description: PRK12404 Location: 5479822-5480818 bp Feature: domain Description: PRK1 2404 Location: 5479822-548081 8 bp Feature: gene Location: 5481259-5483181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5481649-5482354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5481 649-5482354 bp Feature: domain Description: HNHc Note: nucleases Location: 5482933-5483065 bp Feature: domain Description: HNHc Note: nucleases Location: 5482933-5483065 bp Feature: gene Location: 5485061-5485177 bp Feature: gene Location: 5485215-5485397 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4712 (Uncharacterized protein ), RVT-GII, beta_clamp (cl29549), HTH_ARSR (smart00418), RVT_N (pfam13655), GIIM (pfam08388), DDE_Tnp_1 (pfam01609), RepL (pfam05732), Cache_2 (smart01049), HNHc (smart00507)
PinE (COG1961), spore_ger_x_C (TIGR02887), spore_V_AE (TIGR02839), PRK12404 (stage V sporulation protein AD; Provisional)